Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d19
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   5.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 67  KILNYELNYNIIHFRL 114
           KI+N + N+N ++FR+
Sbjct: 390 KIINNDFNFNDVNFRI 405


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 338 IPITYKIVFKKANEQTKYTYKDDSNKFYYSCVDL 439
           IP+ Y  +     +Q  Y  +D     YY+ V+L
Sbjct: 194 IPVNYSALLSHDEQQLSYFTQDIGLAAYYAQVNL 227


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 204 IFKLVKSIDTPI*RIIMYLIVILR*INSKL 115
           IFK++KS +  I R I+ + +I +   SKL
Sbjct: 62  IFKIIKSTNEKITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 204 IFKLVKSIDTPI*RIIMYLIVILR*INSKL 115
           IFK++KS +  I R I+ + +I +   SKL
Sbjct: 45  IFKIIKSTNEKITRYIIRMFLISQQKTSKL 74


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 67  KILNYELNYNIIHFRL 114
           KI N +LN+N ++FR+
Sbjct: 382 KIANGDLNFNEVNFRI 397


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 69 FATECLAVTVFNVMLW 22
          F   C+  TVF+V+ W
Sbjct: 34 FCRNCIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 69  FATECLAVTVFNVMLW 22
           F   C+  TVF+V+ W
Sbjct: 482 FCRNCIHPTVFSVLFW 497


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 340  TDHVQNCIQESKRTNKI 390
            T  +++C+++ KR NKI
Sbjct: 1304 TSIIKDCVEDMKRGNKI 1320


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 374 NEQTKYTYKDDSNKFYYS 427
           N   KY Y ++  K YY+
Sbjct: 93  NNNYKYNYNNNCKKLYYN 110


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 357 LYSRKQTNKQNIHIRMILTNFITHA 431
           L+S+    K+N  I M   +F+T+A
Sbjct: 371 LFSKYDAKKRNFFITMFDLDFLTNA 395


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 306  NGMKIR*SNIQYRSRTKLYSRKQTNKQNIHIRMILTNFITHASIY 440
            NG  I    IQYR   + +    +N   +  R ++TN +  +S+Y
Sbjct: 1525 NGCPILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTN-LQPSSVY 1568


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 306  NGMKIR*SNIQYRSRTKLYSRKQTNKQNIHIRMILTNFITHASIY 440
            NG  I    IQYR   + +    +N   +  R ++TN +  +S+Y
Sbjct: 1521 NGCPILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTN-LQPSSVY 1564


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 358 NFVRDRYCIFD*RIFIPFQIIKIFNTL 278
           NF+   +C+ D +  IPF  I++ N +
Sbjct: 281 NFILHLFCLLDVQWRIPFNGIQMPNLM 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,262
Number of Sequences: 438
Number of extensions: 3566
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)