Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d17
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   5.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.8  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   6.8  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   6.8  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 110 CKVLAFRSPLRTSEQIIEF 166
           CK   + SPL ++ +++ F
Sbjct: 36  CKACGYHSPLESNHKLVTF 54


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 529 PISLSECC*CSKQTFFFINCLVSI*TNYCTK 621
           P S S C   +  +   +NCL +  TN+  K
Sbjct: 233 PASRSSCLGSNTSSMLSLNCLNTGRTNFTNK 263


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 529 PISLSECC*CSKQTFFFINCLVSI*TNYCTK 621
           P S S C   +  +   +NCL +  TN+  K
Sbjct: 22  PASRSSCLGSNTSSMLSLNCLNTGRTNFTNK 52


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 529 PISLSECC*CSKQTFFFINCLVSI*TNYCTK 621
           P S S C   +  +   +NCL +  TN+  K
Sbjct: 22  PASRSSCLGSNTSSMLSLNCLNTGRTNFTNK 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,335
Number of Sequences: 336
Number of extensions: 3178
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)