Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d09
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   173   9e-45
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   173   9e-45
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   2.8  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   2.8  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   3.7  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   3.7  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   4.9  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  173 bits (422), Expect = 9e-45
 Identities = 78/127 (61%), Positives = 104/127 (81%)
 Frame = +2

Query: 125 PLSLTQNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 304
           P     NE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+
Sbjct: 2   PPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVK 61

Query: 305 LTVXNXQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGXISLEDVIGIAKIMRNRSM 484
           LT+ N QA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+G +SL+++I +A+ MR +S+
Sbjct: 62  LTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSL 121

Query: 485 ARYLSGS 505
           A+ LSG+
Sbjct: 122 AKELSGT 128


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  173 bits (422), Expect = 9e-45
 Identities = 78/127 (61%), Positives = 104/127 (81%)
 Frame = +2

Query: 125 PLSLTQNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 304
           P     NE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+
Sbjct: 2   PPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVK 61

Query: 305 LTVXNXQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGXISLEDVIGIAKIMRNRSM 484
           LT+ N QA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+G +SL+++I +A+ MR +S+
Sbjct: 62  LTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSL 121

Query: 485 ARYLSGS 505
           A+ LSG+
Sbjct: 122 AKELSGT 128


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 346 GNNSYLGLXVXNCQLHSDLETLPVTCGLGNVITHLFRRQTKR 221
           GN  Y G+     +L S LE   + C    VI    +RQT R
Sbjct: 727 GNQIYEGILQNEKELRSKLEAYHINC--NKVIKEFSKRQTAR 766


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 162 FTILISFWVKLRGHFVDYLVQLYXIITLNPXGW 64
           F  L  +WVKL+  F + LV  Y I TL    W
Sbjct: 132 FGYLNRYWVKLKNRFTETLV--YDIYTLCLVSW 162


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 290 KITVQLTVXNXQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGXISLEDVIGIAKIM 469
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 470 RNR 478
           RNR
Sbjct: 83  RNR 85


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 201 DDVAPTSPPTHRKFTILISFWVKL 130
           D++A T PP HRK  IL+   +K+
Sbjct: 249 DELAKTLPPYHRKNLILVRRCLKM 272


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 424 RXHLP*RCNRHCEDHEKQINGPVP 495
           + H+  +C  HC  H  +   PVP
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,582
Number of Sequences: 5004
Number of extensions: 36314
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)