Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6d09
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 179 1e-45
02_05_0416 + 28791512-28792012 175 2e-44
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 1.6
03_06_0499 - 34354040-34354528 29 2.8
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 3.7
03_06_0776 - 36176390-36177589 28 4.9
07_03_0313 + 16620817-16621515 27 6.5
06_02_0036 - 10844876-10846173,10846490-10847012 27 6.5
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 6.5
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725... 27 8.6
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 8.6
>04_04_1026 + 30214437-30214937
Length = 166
Score = 179 bits (435), Expect = 1e-45
Identities = 87/128 (67%), Positives = 108/128 (84%), Gaps = 1/128 (0%)
Frame = +2
Query: 125 PLSLTQNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 301
P L ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2 PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61
Query: 302 QLTVXNXQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGXISLEDVIGIAKIMRNRS 481
+LTV N QA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+G ISL+DVI IA+IMRNRS
Sbjct: 62 KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRS 121
Query: 482 MARYLSGS 505
MA+ ++G+
Sbjct: 122 MAKEMAGT 129
>02_05_0416 + 28791512-28792012
Length = 166
Score = 175 bits (426), Expect = 2e-44
Identities = 85/128 (66%), Positives = 107/128 (83%), Gaps = 1/128 (0%)
Frame = +2
Query: 125 PLSLTQNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 301
P L ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2 PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61
Query: 302 QLTVXNXQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGXISLEDVIGIAKIMRNRS 481
+LTV N QA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+G ISL+DVI IA++MR RS
Sbjct: 62 KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPRS 121
Query: 482 MARYLSGS 505
MA+ ++G+
Sbjct: 122 MAKEMAGT 129
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 278 WKGLKITVQLTVXNXQAQIAVVPSAAALIIRALKEPPRDRKKQ 406
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>03_06_0499 - 34354040-34354528
Length = 162
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 489 RAIDLFLMIFA-MPITSSREMXPLCLIFFCFLRSRGGSLRALMIRAAAEGTTAIWACXFX 313
R I+ +L+ ++ + S ++ L FF RGG R+L AA+G A W C
Sbjct: 47 RGIERYLLSWSDFLLGSGAKLKEKYLGFFSGEGERGGEARSL----AAKGAAAAWPCCDN 102
Query: 312 TVSCTVILRP 283
CT + P
Sbjct: 103 CGGCTKSIPP 112
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 138 VKLRGHFVDYLVQLYXIITLNPXGWVWIPQ 49
V LR H L L + +P W+WI Q
Sbjct: 81 VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110
>03_06_0776 - 36176390-36177589
Length = 399
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 404 QKNIKHNGXISLEDVIGIAKIMRNRSMARY 493
+K+I++ G + LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 285 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 148
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>06_02_0036 - 10844876-10846173,10846490-10847012
Length = 606
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 276 SLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT----HRKFTILISFWV 136
S+++L T + + PRG G K + +S T HR++ +L+ FW+
Sbjct: 327 SVISLFHLLITKVNEFPRGITTGGKSTLWTSSECTCVGLHRRYPVLLPFWI 377
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 161 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 262
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>10_08_0489 +
18269824-18270270,18271659-18271948,18272341-18272512,
18272608-18272730,18272832-18272960,18273061-18273255,
18273384-18273470,18273563-18273835,18274047-18274154,
18274769-18275116
Length = 723
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 134 LTQNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQL 307
+ + E++ V ++ GG V A S L+ + + + +GD A+ W+ L +TV L
Sbjct: 20 MVKAELEDVGIKAAGGAVAALSPLSETLWREKAAAEFLGDVSARLA--WRDLTVTVVL 75
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 272 LWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 165
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,533
Number of Sequences: 37544
Number of extensions: 277938
Number of successful extensions: 675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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