Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d09
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   186   1e-47
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   4.4  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    27   7.7  
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    27   7.7  
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    27   7.7  
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    27   7.7  
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    27   7.7  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   7.7  
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    27   7.7  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  186 bits (452), Expect = 1e-47
 Identities = 86/127 (67%), Positives = 106/127 (83%)
 Frame = +2

Query: 125 PLSLTQNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 304
           P      EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T +
Sbjct: 2   PPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCK 61

Query: 305 LTVXNXQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGXISLEDVIGIAKIMRNRSM 484
           LT+ N  A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG ++++ +I IA+IMR RSM
Sbjct: 62  LTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSM 121

Query: 485 ARYLSGS 505
           A+ L G+
Sbjct: 122 AKKLEGT 128


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 295 DLETLPVTCGLGNVITHLFRRQTKRTDFR 209
           D ++LP+ C LG V+ + ++     TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 219 VLLVCLLKRWVMTL 260
           +L++CLLKRW M L
Sbjct: 180 ILMICLLKRWKMNL 193


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 403 LFTVTRRLLKGSDDKGCCRG--NNSYLGLXVXNCQLHSDLETLP 278
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 403 LFTVTRRLLKGSDDKGCCRG--NNSYLGLXVXNCQLHSDLETLP 278
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 403 LFTVTRRLLKGSDDKGCCRG--NNSYLGLXVXNCQLHSDLETLP 278
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 403 LFTVTRRLLKGSDDKGCCRG--NNSYLGLXVXNCQLHSDLETLP 278
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 403 LFTVTRRLLKGSDDKGCCRG--NNSYLGLXVXNCQLHSDLETLP 278
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -2

Query: 171 HRKFTILISF-WVKLRGHFVDYLVQLYXIITLNPXGWVWI 55
           +R    +I+F W    GH + Y  +    +  +P  W W+
Sbjct: 122 YRNTCFIIAFVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 403 LFTVTRRLLKGSDDKGCCRG--NNSYLGLXVXNCQLHSDLETLP 278
           +F + R L+ GSD +    G  NNS +   V NC  H+D  T+P
Sbjct: 1   MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,084,093
Number of Sequences: 27780
Number of extensions: 215129
Number of successful extensions: 511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)