Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6d08
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 29 0.38
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 27 2.7
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 3.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 26 3.5
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 4.7
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.2
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 25 6.2
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 8.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 8.1
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 29.5 bits (63), Expect = 0.38
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 260 YVHQMTKPTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKV---VRNRTPFQNL-QR 427
Y+ Q T+ + + KP+ + K ++ T+ KRRQ++ V R R+P + ++
Sbjct: 128 YMAQSTRRSTRDKPLTSAAAG---KRDKLTELKKRRQERSARSVSERTRKRSPVSDYEEQ 184
Query: 428 NRFRRSLESDNLFVIRDLDEIEFLGKDNDSVTV 526
N +S E + +++E + KDN S +
Sbjct: 185 NESEKSEEEEGYSPSYAEEKVEQVSKDNASANL 217
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 269 QMTKPTLQPKP--MGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRR 442
++ KPTL + + PKL+DE+ A KR ++K + +N + + +
Sbjct: 78 EVEKPTLSATVGRVSFLKKMPKLEDEEEILAKKREEQKLRKRSRQNDDGSDDDEVENLKN 137
Query: 443 SLESDNL 463
LE L
Sbjct: 138 DLELQKL 144
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 339 NKRHKRIKEDKRNGTLKSLEIERL 410
+K+ KR+K+DK G + L+ E +
Sbjct: 372 SKKKKRVKQDKEYGVARGLDFENV 395
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 93 AEIKEKFTNIERNSNVLYIFRQIRC 19
A +K+K I R SN++Y ++RC
Sbjct: 350 ALVKKKLDAINRLSNIIYYSERVRC 374
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 HQMTKPTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVR-NRTPFQNLQRNRFRR 442
HQ++ K + +TE L E+ +A K+++K + K+ L++ +
Sbjct: 348 HQISVMQNDEKRINNAKTELSLSLEKKLEAKKQKEKVYKDKLDELANLETMVLEKKKAVA 407
Query: 443 SLESDNLFVIRDLDEIEFLGKD 508
+ E+ N + DL+++E L KD
Sbjct: 408 TREAANKIRLVDLNDLE-LQKD 428
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 380 NSKVVRNRTPFQNLQRNRFRRSLESDNLFVIRDLDEIEFLGKDNDSVTV 526
NS+ V + + ++ + R LES+NL + + IE L KD +++ V
Sbjct: 732 NSEAVSDEQERELIESEKHRMKLESENLHLQAN---IELLKKDLEAINV 777
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -3
Query: 366 LLLFACVVCSSFNFGSVLNVPIGFG----*SVGFVI*W 265
L ++ V SSFN G+ N P+GF S+GF I W
Sbjct: 76 LSMYESVHDSSFNLGTRPNSPLGFRQTAYLSLGFCIIW 113
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 86 ISAQIPQHNSTYIDKSDNILRVPAIAYDDQKTRRKYKKTPK 208
+ ++P+ T K++ + P I D ++ +K KKT K
Sbjct: 214 VEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKK 254
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 339 NKRHKRIKEDKRNGTLKSLEIERLFRTYRE 428
++RH+ + D++ L+S++ ERL YRE
Sbjct: 186 DRRHREL--DRQRQELQSVDAERLAEEYRE 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,112
Number of Sequences: 5004
Number of extensions: 36859
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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