Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d08
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396...    30   1.6  
03_01_0556 + 4139457-4140134                                           27   8.3  
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94...    27   8.3  

>03_06_0157 -
           32039020-32039175,32039267-32039338,32039478-32039602,
           32039678-32040559,32040623-32040692,32041248-32041739,
           32041985-32042044,32042541-32042618,32043322-32044344
          Length = 985

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 282 PHFSRSQWARSEQNQS*KTNKRHKRIKEDKRNGTLKSLEIERLFRTYREIDLEEA 446
           PH+   +W +  Q++S + N   + + ED R   L S     L+RT+ +I  + A
Sbjct: 730 PHYILKRWRKDAQSESPRENYGFEAVDEDPR--FLLSKRYSMLYRTFYKIAAKAA 782


>03_01_0556 + 4139457-4140134
          Length = 225

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 281 PTLQPKPMGTFRTEPKLKDEQTTQANK 361
           P  Q  P   FRTEP+L DE   +A K
Sbjct: 183 PGAQLVPFSAFRTEPRLPDEVLKKAFK 209


>03_01_0121 +
           940338-940637,941023-941324,941417-941969,943889-944848
          Length = 704

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 473 RDLDEI--EFLGKDNDSVTVNAHV 538
           RD+DEI  EFLG D  +V  N HV
Sbjct: 492 RDMDEIDFEFLGHDKCAVQTNFHV 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,817
Number of Sequences: 37544
Number of extensions: 199484
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)