Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6d08
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110482-7|CAB54388.1| 106|Caenorhabditis elegans Hypothetical ... 29 1.8
Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical pr... 29 2.4
U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable abnorm... 29 2.4
Z79694-2|CAB01960.1| 173|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 3.2
U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoy... 28 4.2
U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoy... 28 4.2
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70309-9|CAH10784.1| 323|Caenorhabditis elegans Hypothetical pr... 27 9.8
U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical p... 27 9.8
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ... 27 9.8
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ... 27 9.8
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ... 27 9.8
>AL110482-7|CAB54388.1| 106|Caenorhabditis elegans Hypothetical
protein Y39G8B.9 protein.
Length = 106
Score = 29.5 bits (63), Expect = 1.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 325 WFCSERAHWLRLKCGLCH 272
W C++R H+ CG CH
Sbjct: 58 WTCAQRKHYCERTCGFCH 75
>Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical
protein F14F3.1a protein.
Length = 455
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 281 PTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLE 451
P ++PK G F + K + + + + K+ RNRT F +Q + E
Sbjct: 181 PLIEPKTEGEFEKDEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLEKEFE 237
>U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable
abnormal-3 protein.
Length = 455
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 281 PTLQPKPMGTFRTEPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLE 451
P ++PK G F + K + + + + K+ RNRT F +Q + E
Sbjct: 181 PLIEPKTEGEFEKDEDQKPPTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLEKEFE 237
>Z79694-2|CAB01960.1| 173|Caenorhabditis elegans Hypothetical
protein C15A11.2 protein.
Length = 173
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +2
Query: 170 DQKTRRKYKKTPKSTXXXXXXXXXXXXXXLYVHQMTKPTLQPKPMGTFRTEPKLKDEQTT 349
DQ + + K+ PK V + KP L+ +P + +PK K+E+ T
Sbjct: 79 DQLVKEQPKEQPKEQPKEQPKEQPKDQAKDVVKDIAKPPLKEQPKEQPKEQPKKKEEEKT 138
Query: 350 QAN 358
N
Sbjct: 139 SKN 141
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +2
Query: 320 EPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESD 457
E K DE++ + +++++KK + + R+R+ ++ R+R RR D
Sbjct: 861 ESKKSDEKSERKSEKKEKKRDKERKRSRSRSRDRDRDRSRRDRSRD 906
>U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform a protein.
Length = 558
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 89 SAQIPQHNSTYIDKSDNILRVPAIAYDDQKTRRKYKK 199
S ++ +HN ++ + ILR AIAY + KT R YKK
Sbjct: 281 STKVFEHND--MESLERILR-DAIAYGNPKTHRPYKK 314
>U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform b protein.
Length = 586
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 89 SAQIPQHNSTYIDKSDNILRVPAIAYDDQKTRRKYKK 199
S ++ +HN ++ + ILR AIAY + KT R YKK
Sbjct: 309 STKVFEHND--MESLERILR-DAIAYGNPKTHRPYKK 342
>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 384 EFHFFCLLLFACVVCSSFNFGSVLNVPIGFG*SVGFVI 271
+F FF L F + CS F + PI + +GFV+
Sbjct: 123 QFKFFLNLYFLLMACSQFIPAIQIGAPITYWGPLGFVL 160
>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 384 EFHFFCLLLFACVVCSSFNFGSVLNVPIGFG*SVGFVI 271
+F FF L F + CS F + PI + +GFV+
Sbjct: 87 QFKFFLNLYFLLMACSQFIPAIQIGAPITYWGPLGFVL 124
>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 384 EFHFFCLLLFACVVCSSFNFGSVLNVPIGFG*SVGFVI 271
+F FF L F + CS F + PI + +GFV+
Sbjct: 126 QFKFFLNLYFLLMACSQFIPAIQIGAPITYWGPLGFVL 163
>Z70309-9|CAH10784.1| 323|Caenorhabditis elegans Hypothetical
protein R102.10 protein.
Length = 323
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 320 EPKLKDEQTTQANKRRQKKWNSKVVRNRTPFQNLQRNRFRRSLESDN 460
EP + E+T Q + + K + + N +P+QNL FR S DN
Sbjct: 2 EPNI--EETCQLHTKFGKLFGTVTEPNNSPYQNLLDLSFRPSKVQDN 46
>U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical
protein F09E5.3 protein.
Length = 303
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 556 ISPIPLNMGIHCNRIIVFTQKL 491
I+P+P + IHC + V+ Q++
Sbjct: 87 INPVPTDPSIHCGSVCVYPQRI 108
>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 384 EFHFFCLLLFACVVCSSFNFGSVLNVPIGFG*SVGFVI 271
+F FF L F + CS F + PI + +GFV+
Sbjct: 123 QFKFFLNLYFLLMACSQFIPAIQIGAPITYWGPLGFVL 160
>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 384 EFHFFCLLLFACVVCSSFNFGSVLNVPIGFG*SVGFVI 271
+F FF L F + CS F + PI + +GFV+
Sbjct: 87 QFKFFLNLYFLLMACSQFIPAIQIGAPITYWGPLGFVL 124
>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 384 EFHFFCLLLFACVVCSSFNFGSVLNVPIGFG*SVGFVI 271
+F FF L F + CS F + PI + +GFV+
Sbjct: 126 QFKFFLNLYFLLMACSQFIPAIQIGAPITYWGPLGFVL 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,247,826
Number of Sequences: 27780
Number of extensions: 202811
Number of successful extensions: 767
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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