Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d07
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.6  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   4.6  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    26   4.6  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 565 EDLSRTIPTRRRQQNKKKNGNGDTFPNDNINSLQYDNSP 681
           +D +   P     +N   + N D FPND+I+S  + + P
Sbjct: 117 KDANHFPPNYPEPKNDSVSSNIDEFPNDSISSASFLSVP 155


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 574 SRTIPTRRRQQNKKKNGNGDTFPNDNINSLQ 666
           S  +  RRR+ N+++N     FP+++++ L+
Sbjct: 48  SPVLSPRRRRMNRRRNERSRNFPSNHLSYLE 78


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 261 RHFSFV*KAPCFVNYVIFLQITHLHVLSVRFSIHQPLRR 145
           RHF+   +  C  +  +F    H H+ + +  +HQ +R+
Sbjct: 248 RHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRK 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,179
Number of Sequences: 5004
Number of extensions: 44052
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)