Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6d06
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 48 2e-06
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 44 2e-05
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 39 5e-04
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 36 0.007
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 33 0.027
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 33 0.047
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.081
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 32 0.081
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.081
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 31 0.11
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.19
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.33
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.43
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.43
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 29 0.57
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.76
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.76
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 1.8
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 27 2.3
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 27 2.3
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 3.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 4.0
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 4.0
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 4.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 5.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 5.3
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 25 7.1
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 7.1
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 7.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 7.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 9.3
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +1
Query: 325 QKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISN--TLL 498
Q I +Q QNR LK+E + + ++KAL E N+SL++A +++ + E +N T +
Sbjct: 314 QNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEM 373
Query: 499 KKIQALKKEKETLAHHYEREEECLTNDLSRKIKSVETR 612
K+ + KE L HY+ + +SR +S+ +
Sbjct: 374 KEARQKLNNKEALISHYDDDFRAKELKISRLSESLREK 411
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/100 (28%), Positives = 49/100 (49%)
Frame = +1
Query: 292 LPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQE 471
L S ++ + I L+ +N LK L+ R AL EN+SLR+A+ +Q +++
Sbjct: 79 LQSSNNQAEESRNLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIA 138
Query: 472 EEYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRK 591
E +S +I+AL+ E L + + L++ RK
Sbjct: 139 SEQLS-IAKDQIEALQNENSHLGEQVQSAHQALSDIEERK 177
Score = 28.7 bits (61), Expect = 0.76
Identities = 24/90 (26%), Positives = 44/90 (48%)
Frame = +1
Query: 316 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 495
+QLQ + ++ +K E D Y+L+ E+N L+ S+ Q ++E S++L
Sbjct: 943 EQLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNH-LKITSLE-QRIVILQDEIASSSL 1000
Query: 496 LKKIQALKKEKETLAHHYEREEECLTNDLS 585
+ + + K+ ET E + L N+LS
Sbjct: 1001 --RCENITKDSETRVALLLEENKHLNNELS 1028
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 319 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQA-SVSIQAKAEQEE 474
+L+ RI Q+N +L+ + + +VKALQE S +A S S+ A + E
Sbjct: 1513 RLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADTKDLE 1565
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 39.1 bits (87), Expect = 5e-04
Identities = 29/100 (29%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Frame = +1
Query: 322 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEY-ISNTL- 495
L +IESL+ QNR +++ + LR+ A + +++L + ++ +Q ++ E + N+
Sbjct: 461 LGNQIESLRTQNR--EIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMKNSND 518
Query: 496 LKKIQALKKEKETLAHHYE---REEECLTNDLSRKIKSVE 606
L +I L++E E L + +E++ L N+L ++IKS E
Sbjct: 519 LNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSYE 558
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/75 (21%), Positives = 40/75 (53%)
Frame = +1
Query: 313 RDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNT 492
RD L+ ++++L+ N L++ + ++++L+ +NR + + ++ A + +
Sbjct: 437 RDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDKALAE 496
Query: 493 LLKKIQALKKEKETL 537
++Q + KE ETL
Sbjct: 497 TNIRLQEVTKELETL 511
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 322 LQKRIESL--QQQNRVLK--VELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYIS 486
L+KR+ES+ +Q +K VEL + ++ + SL Q S K E++ +Y+S
Sbjct: 175 LEKRLESMAPEQIKEAVKDNVELHAERANLQLQLKRTESLLQKSEDKNFKLEEKVDYLS 233
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/99 (22%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Frame = +1
Query: 316 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 495
+ L ++ E+ + Q + ++E +T +LR+KA E+ + +S + + +EE ++ L
Sbjct: 44 ESLSRKSEAAESQ--LEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKL 101
Query: 496 LKKIQALKKEKETLAHHYEREEECL---TNDLSRKIKSV 603
L++ ++ + A H+ER + L +D+ +K++ +
Sbjct: 102 LRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEM 140
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 33.5 bits (73), Expect = 0.027
Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +1
Query: 307 VSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASV--SIQAKAEQEEEY 480
+ + Q +KRI L+++ L+ +++ + + R + S SIQ E+
Sbjct: 106 LQKSQFEKRISILEKEKEDLQRKMEELTVESMEVVRLTRQVETLSTQYSIQRSQWVREDE 165
Query: 481 ISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKIKSVET 609
++ ++ L ++ E A ++ERE E N +S+ K +++
Sbjct: 166 KKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQLDS 208
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 32.7 bits (71), Expect = 0.047
Identities = 18/87 (20%), Positives = 47/87 (54%)
Frame = +1
Query: 316 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 495
++ R+E + ++ L+ ++ + + L E +S+ + + Q + + +S+TL
Sbjct: 891 ERANSRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSD-LSSTL 949
Query: 496 LKKIQALKKEKETLAHHYEREEECLTN 576
KK+ ++KK+++T++ Y+ E+ N
Sbjct: 950 EKKLSSIKKDEQTISSKYKELEKDYLN 976
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 31.9 bits (69), Expect = 0.081
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +1
Query: 322 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLK 501
L +R L + N ++ R K+ ++N+ + + S A E++ + N+L K
Sbjct: 254 LNERATKLSEANENFNNRFKEFEEREKSAIKQNKE-QSSEGSKTANQTHEQKELINSLEK 312
Query: 502 KIQALKKEKETLAHHYEREEECLTN--DLSRKIKSVE 606
K+ + EK+ L ER + + + R++K +E
Sbjct: 313 KVSDIALEKQLLEEAVERYKLAMVEFAECQRRLKELE 349
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 31.9 bits (69), Expect = 0.081
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 310 SRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISN 489
S+++L + L++ N V+ EL++ KL++ EE S++ + + +++ E N
Sbjct: 483 SQEELLQLNAKLEKANIVID-ELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYEN 541
Query: 490 TLLKKIQALK-KEKETLAHHYER 555
+ +I + KE ETL YE+
Sbjct: 542 EVNSEITSRTLKEFETLKTQYEK 564
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 31.9 bits (69), Expect = 0.081
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = +1
Query: 379 DTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYERE 558
D + +++ E+ L+ S S++ K Q+EE L+ + A EK++L+
Sbjct: 34 DEFSRDIESELEKVAKLKSESFSLKGKITQKEELTYR--LQNLAASLNEKKSLSCDLHSR 91
Query: 559 EECLTNDLSRKIKSV 603
++ + +DLS + KS+
Sbjct: 92 KQLIEDDLSNRKKSI 106
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +1
Query: 307 VSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ-----E 471
++ + L+++ + L+++N LKVE + + L+EE L++ ++K E+ +
Sbjct: 98 LASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLKKKCNVYKSKFEESSLRCK 157
Query: 472 EEYISNTLLK-KIQALKKEKET 534
Y SNT LK ++ +K+ ET
Sbjct: 158 SLYSSNTKLKDSMETMKRRMET 179
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +1
Query: 319 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLL 498
+ ++ +SLQ+ ELD + + E + +R + + K+ Q+E +S + L
Sbjct: 975 EFNEQCKSLQETIVTKDAELDKLTKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSES-L 1033
Query: 499 KKIQALKKEKETL 537
K+++ L++E TL
Sbjct: 1034 KRVKKLERENSTL 1046
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.9 bits (64), Expect = 0.33
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Frame = +1
Query: 370 VELDTYKLRVKALQEENRSLRQASVSIQ---AKAEQE----EEYISNT-LLKKIQAL-KK 522
V+++ + R+KALQ + LR+ ++++ AK++ E EE I+++ ++K + L +
Sbjct: 615 VQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEGITDSWIVKHHETLYEL 674
Query: 523 EKETLAHHYEREEECL 570
EKE + ++RE E L
Sbjct: 675 EKEKIKKKFDRENEKL 690
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.5 bits (63), Expect = 0.43
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 328 KRIESL-QQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKK 504
KR++ L +++ R+ K E K K LQ+E + A A+Q I+NT
Sbjct: 723 KRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHADQA---IANT--GP 777
Query: 505 IQALKKEKETLAHHYEREEE 564
+ E ET HYE EEE
Sbjct: 778 VAPPYFEHETEPSHYEEEEE 797
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.43
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = +1
Query: 316 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 495
D+LQKR+++L+++N K + D+ L++ L+ + + ++ EE
Sbjct: 623 DELQKRLQTLEEENN--KAKEDSTSKTSNLLEQ----LKMTEAEVDSLRKENEENKQVIA 676
Query: 496 LKKIQALKKEKETLAHHYEREEECLTNDLSR---KIKSVETRKVS 621
LK+ + +K L + E L + LS+ +++SV T K S
Sbjct: 677 LKESELVKSNDNKLL--LNEQIESLNDQLSQLKTEMESVTTSKES 719
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 29.1 bits (62), Expect = 0.57
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +1
Query: 307 VSRDQLQKRIESLQQQNRVL---KVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEE 477
+ R+ +K E L Q + K ELD ++R++ALQ + L+ I+ E+E
Sbjct: 51 ILREANRKSYEQLVQAKTITAEHKSELDNARIRLQALQYKKLHLK---TIIKNYEEKEHI 107
Query: 478 YISNTLLKKIQALKKEKE 531
Y + L+ K + LK+ E
Sbjct: 108 YTALPLVSKEEFLKEHPE 125
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 0.76
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +1
Query: 349 QQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEK 528
++ ++ K ++R K + R ++ Q K +E+E I+ +K+++ L+KE+
Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKRE-KERQQREQEKKLREQEKIAAKKMKELEKLEKER 134
Query: 529 ETLAHHYEREEE 564
L R+EE
Sbjct: 135 IRLQEQQRRKEE 146
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.76
Identities = 21/95 (22%), Positives = 47/95 (49%)
Frame = +1
Query: 322 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLK 501
++K ++ L + VEL+ + L EEN ++ ++++ K++++ + +N
Sbjct: 1079 IEKNVQKLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANF--- 1135
Query: 502 KIQALKKEKETLAHHYEREEECLTNDLSRKIKSVE 606
+ LK++ + L E LTN+ + I S+E
Sbjct: 1136 -VDDLKEKSDAL--------EQLTNEKNELIVSLE 1161
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +1
Query: 319 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLL 498
QLQ + +Q+ L E + + ++ L+E N+SL + + + E+ + + L
Sbjct: 641 QLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDS-LEKNIQTLKEDLR 699
Query: 499 KKIQALKKEK 528
K +AL+ K
Sbjct: 700 KSEEALRFSK 709
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Frame = +1
Query: 301 STVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEY 480
ST+ D+ + I SL ++ L K R L+ L +A K ++ E
Sbjct: 106 STLEHDKSKPVISSLIDED----ANLSQIKARKSVLESRFSRLEEAFRDFYIKNLEKTED 161
Query: 481 ISNT-----LLKKIQALKKEKETLAHHYEREEECLTNDL 582
+ T L K++ + + + E HYE+ +CL L
Sbjct: 162 LIRTDSHFVLNKELLSFRNDYEHRRKHYEKYSQCLNKQL 200
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +1
Query: 400 KALQEENRSLRQASVSIQAKAEQEE--EYISNTLLK--KIQALKKEKET-LAHHYEREEE 564
+ + EENR + ++ + QEE I + LL+ K +A KK+ E LA +R +
Sbjct: 78 QGIDEENRVRLERMNDLEIEGAQEEIRATIRDDLLEMLKKRAFKKKAERELAQRKDRSSQ 137
Query: 565 CLTNDLSRK 591
T DLS++
Sbjct: 138 VNTPDLSQR 146
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +1
Query: 289 MLPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ 468
+L S Q Q+ + S Q ++L E + +EN S A++ + +
Sbjct: 5 LLRDSVKKASQFQRSLHSDPNQAKILLEERRKLLEEANSSADENDSHSMATIKSHFERLK 64
Query: 469 EEEYISNTLLKKIQA 513
+E + N +LKK A
Sbjct: 65 RDEQLLNGVLKKYDA 79
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 385 KYLTPLSKLYFVAVEIQFFSVVDHEKQYSEEALRHRQVNWSHFRT 251
K LT K F A E + SVV+ E +Y E ++ ++ +W F +
Sbjct: 178 KSLTSSCKFLFEAKE-RLTSVVETEHEYYTELVKVKEASWPLFNS 221
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 340 SLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVS-IQAKAEQEEEYISN-TLLKKIQA 513
SLQ++N L+ ELD ++ Q RS +Q ++ ++A+ E ++ + T +KK
Sbjct: 47 SLQEKNAELRAELD----NIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTVP 102
Query: 514 LKKEKETLAH 543
K E E H
Sbjct: 103 FKSEVELDKH 112
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 487 NTLLKKIQALKKEKETLAHHYEREEECLTND----LSRKIKSVE 606
N+L ++A+ K+ AH+ +E LTN L ++KS+E
Sbjct: 160 NSLEANLKAISKDSNNKAHNNRYDESSLTNPEFSILVERLKSIE 203
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 301 STVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSL 429
+T+ DQL++++ L+++ R+LK T+++ +L N SL
Sbjct: 118 TTLENDQLRQKVRQLEEELRILKDGSFTFEM---SLPHRNPSL 157
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 295 PPSTVSRDQLQKRIESLQQQN--RVLKVELDTYKL-RVKALQEENRSLRQASVSIQAKAE 465
P S + D ++ + L + ++ + DT+ L +K L+EE LR S+ +
Sbjct: 336 PVSLDAVDGIELSLRDLNDEESLQLKRARYDTFGLGNIKDLEEEEEKLRSVEGSLNEELS 395
Query: 466 QEEE 477
+EE+
Sbjct: 396 EEEK 399
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 499 KKIQALKKEKETLAHHYEREEECLTNDLSRKIK 597
+K+Q +K+E+ LA+H E E L + +RK K
Sbjct: 202 RKLQWVKEERTMLANHLEALERKLIDARNRKEK 234
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 430 RQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYER 555
R+ + + ++ EQEEEY S + IQ K +K L +R
Sbjct: 1805 RKKKLVLPSQVEQEEEYWSGLMEVTIQIWKHDKGFLEPELDR 1846
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 5.3
Identities = 22/89 (24%), Positives = 41/89 (46%)
Frame = +1
Query: 322 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLK 501
LQ++I LK ++ T+K + +AL + LRQ + + +K +Q + S+
Sbjct: 456 LQEQIHQNDDLIESLKNQILTWKNKYEALAKLYTQLRQEHLDLLSKYKQIQLKASSAQEA 515
Query: 502 KIQALKKEKETLAHHYEREEECLTNDLSR 588
+ K E+E + E + L D +R
Sbjct: 516 IDKKEKMEREMKNKNLELADMILERDRAR 544
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 391 LRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYERE 558
LRV + ++R ++SVS + EQ + Y N L+++ L+ E L+ E++
Sbjct: 467 LRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLRSENNELSIQDEKK 522
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/44 (22%), Positives = 29/44 (65%)
Frame = +1
Query: 394 RVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKE 525
+++ L +EN +L+ ++ + +EEY++ L++K++ ++K+
Sbjct: 95 KIEKLLKENGTLKNEEKCLRMQIVAQEEYVA-PLIQKLEIIEKK 137
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 298 PSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSL 429
P+ S + ++ L+QQ VL L+ K +V L+E RSL
Sbjct: 331 PNGPSASAIDNDLKMLEQQLNVLGRHLEGRKSQVAKLEERLRSL 374
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 397 VKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALK-KEKETLAHHYER 555
++ L + N L S+ A +Q + + LLKK + L+ KEK+ L HYE+
Sbjct: 436 LEKLIKNNSCLEAELPSMYAAFDQSQ----SRLLKKYEELETKEKKALEMHYEK 485
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 457 KAEQEEEYISNT----LLKKIQALKKEKETLAHHYEREEECLTNDLSRKIKSVE 606
+ + E +I+N+ L KK+Q E TL+H E+E L N L RKI ++
Sbjct: 19 RENENELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNEL-NKLIRKINELQ 71
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 292 LPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVS 447
L T ++ + + QQ+ L++ELD K K ++EE + LR+ S
Sbjct: 647 LEEQTQLAEKYHEELLDNQQKLYDLRIELDYTKSNCKQMEEEMQVLREGHES 698
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.1
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +1
Query: 316 DQLQKRIESLQQQ-NRVLK---VELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYI 483
+Q + +E LQ+ N V++ ++ K + K R + S Q E ++
Sbjct: 420 EQTCQEVERLQRSYNHVMEEANLQHPLVKEQFKRFAHMQREIVAMSEQYQKSLEDCQK-- 477
Query: 484 SNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKIK 597
+ + ++++ L K+K T HYE+E T DL+R+++
Sbjct: 478 AKSRYEQLETLFKDKCTENKHYEQE----TKDLARQVQ 511
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 316 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQ 453
+QLQ+ + S LK LD V+ L+ NR+L +++
Sbjct: 377 EQLQRELASETVVKENLKSSLDQQSANVQKLESTNRALESTIKTLE 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,670
Number of Sequences: 5004
Number of extensions: 40379
Number of successful extensions: 207
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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