Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6d02
         (326 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   4.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   5.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   5.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   5.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   7.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 325 FFFISDKFTVHFTKQVCVSNHF*IH 251
           F++    FTVH    VC+   + +H
Sbjct: 241 FYYAFILFTVHLLLLVCIYYFYYMH 265


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 147 GKGAEMQVHRSDDNPEVNRL 88
           G+    + +RSD+ P++  L
Sbjct: 269 GRDENPRTYRSDEGPQITEL 288


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -3

Query: 219 ECNSCIC*CKDLQDSTVVLVARCSGKGAEMQVHRSDDNP 103
           EC    C    ++   VV   +C+ K  E +  +  D P
Sbjct: 242 ECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKP 280


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 137 APLPEQRATNTTVLSCK 187
           +P P+QR+ + T LS K
Sbjct: 696 SPSPQQRSPSVTDLSTK 712


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 105 DCRPICGPASPLL 143
           D   +CGP +PL+
Sbjct: 375 DFHGLCGPKNPLI 387


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,407
Number of Sequences: 336
Number of extensions: 1704
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)