Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c23
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 221 HDFRVSDESDSK*NYCHCSFCYLG 150
           + F  SD + S   YC C  C LG
Sbjct: 91  NSFLSSDSASSGNVYCKCDDCLLG 114


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 229 HKRGRREFACRSNQDACSSGSPAGSFYV 312
           H R  R+F    + DA SS S + S  +
Sbjct: 30  HSRRHRDFTVAESYDASSSNSDSLSMTI 57


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 79  TDAVHRAVYLSIAPINTNQSF 141
           T+A H A+Y ++AP  T   F
Sbjct: 768 TEAEHYALYTAMAPHATASEF 788


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 575 QLLKRLPIEPVLQAIEHRDATTI 507
           QL+KR PI  ++  ++H   T +
Sbjct: 140 QLIKRHPIVTIMGHVDHGKTTLL 162


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 215 NHVDTINAVGENSHAAQIKMRALLVALLGVSM 310
           N+   I  VG NS    +KM   L  L+ V++
Sbjct: 31  NYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNL 62


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 511 RLLRHHS-DK*KQGCHCRQKCTGFSISNNKPDRGLRNSSSETDVTQFLRDVIVVQL*LDW 335
           ++LR+   D  K    C  KC+ +   +N  +  L N    T   Q+LR + V Q+ L+W
Sbjct: 134 KILRNDRIDSYKSNLKC-DKCSTYQ--SNGEEVCLENC---TGYQQYLRLLEVPQINLEW 187

Query: 334 LRGKS 320
             G S
Sbjct: 188 GEGSS 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,151
Number of Sequences: 438
Number of extensions: 2743
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)