Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6c18
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 195 4e-51
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 190 2e-49
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 189 3e-49
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 164 8e-42
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 132 3e-32
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 77 2e-15
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 62 5e-11
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 7.1
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 7.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.4
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.4
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 195 bits (476), Expect = 4e-51
Identities = 92/133 (69%), Positives = 110/133 (82%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
GTVIGIDLGTTYSCV V KNGRVEIIANDQGNRITPSYVAFT+D ERL+G+AAKNQ +N
Sbjct: 35 GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPSN 93
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
PENT+FD KRLIGR++ ++T+ D+K FPF +V ++P V+V K F PEEISAM
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 607 VLTKMKETAEAYL 645
+L+KMK+TAEAYL
Sbjct: 154 ILSKMKQTAEAYL 166
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 190 bits (462), Expect = 2e-49
Identities = 92/130 (70%), Positives = 105/130 (80%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
T+FDAKRLIGR++ D VQ D+K +PFKV+ K+ KP +QV+ K F PEEIS+MVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 616 KMKETAEAYL 645
KM+ETAEAYL
Sbjct: 124 KMRETAEAYL 133
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 189 bits (461), Expect = 3e-49
Identities = 91/130 (70%), Positives = 106/130 (81%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
T+FDAKRLIGR ++D VQ D+K +PFKV+EK+ KP +QV+ K F PEEIS+MVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 616 KMKETAEAYL 645
KM+E+AEA+L
Sbjct: 124 KMRESAEAFL 133
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 164 bits (399), Expect = 8e-42
Identities = 81/130 (62%), Positives = 95/130 (73%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCV V++ VEII NDQG R TPS+VAFT+ ERL+GDAAKNQ NP N
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTET-ERLVGDAAKNQAAMNPRN 67
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
TVFDAKRLIGR + D Q D+K +PFKV++ N P ++V K F +EISAMVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 616 KMKETAEAYL 645
KMKE +EA L
Sbjct: 128 KMKEISEAKL 137
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 132 bits (320), Expect = 3e-32
Identities = 66/133 (49%), Positives = 91/133 (68%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
G VIGIDLGTT SC+ + + ++IAN +G R TPS VAFT+DGERL+G +AK Q N
Sbjct: 50 GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVIN 109
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
PENT F KRLIGR + + VQ D+K P+K+VE +S ++ ++G K ++P +I
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVE-HSNGDAWLE-ARG-KTYSPSQIGGF 166
Query: 607 VLTKMKETAEAYL 645
+L+KM+ETA YL
Sbjct: 167 ILSKMRETASTYL 179
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 77.0 bits (181), Expect = 2e-15
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +1
Query: 253 VIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPE 432
V+GID G + + + V +N +++I N+ NR TPS V++ + R +G+AAK+ +N
Sbjct: 7 VVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSY-GERSRFLGEAAKSAEASNFR 65
Query: 433 NTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMV 609
NTV KRL GR + D ++ + F K+ E + +VQ + F+ ++ A
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 610 LTKMKETAEAYL 645
TK+K AEA L
Sbjct: 126 FTKIKAIAEAEL 137
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 62.5 bits (145), Expect = 5e-11
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNP 429
TVIGI G S + ++G+ +++AN++GNR PS +++ D E G A+ QL N
Sbjct: 25 TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQE-YHGVQARGQLVRNA 83
Query: 430 ENTVFDAKRLIGREWSDQTVQH-DVKFFPFKVV-EKNSKPHVQ--VQTSQGDKVFAPEEI 597
+N+V + + L+G+ + T+ H P V + K VQ ++ +K+ E
Sbjct: 84 DNSVTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEA 143
Query: 598 SAMVLTKMKETAEAYL 645
S L ++ E+AE +L
Sbjct: 144 SVRHLRRLTESAEDFL 159
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 379 GERLIGDAAKNQLTTNPENT 438
GE ++ D+ N TNP+NT
Sbjct: 6 GENIVSDSIVNMELTNPDNT 25
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 371 VKATYEGVMRFPWS 330
+K TYEG +R PWS
Sbjct: 284 MKLTYEGELRAPWS 297
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 154 KIYRLKDSEINKNLNKIIFTATIRSL*NAFIKHLRI 47
KI+ +DS++ KN+ + + T + S A ++ +I
Sbjct: 545 KIFNPEDSDLEKNITEALLTGDVLSAVKACLEEKKI 580
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 313 VEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPENTVFDAKRLI 462
+E AND ITP A G+ +N+L E +F + L+
Sbjct: 80 LEKYANDMATTITPLIAAVQVFNAEKYGEIIQNRLKMYAERVLFGIEALL 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,265
Number of Sequences: 5004
Number of extensions: 52418
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -