Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c17
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59WT9 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_P26190 Cluster: RNA-directed RNA polymerase subunit VP1...    33   6.2  
UniRef50_UPI000007BF02 Cluster: F56H1.3; n=1; Caenorhabditis ele...    33   8.2  
UniRef50_Q8II83 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  
UniRef50_O76369 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_Q59WT9 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 100

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 21/69 (30%), Positives = 38/69 (55%)
 Frame = +1

Query: 232 LSRTKGLIYQVIKSLKKNVIFLYLCISCVCFNILLFSLRKISLLPNRISIKQ*GINNSKL 411
           LSR K L  Q +  LKK+    +  +SCVCF+++ + L  I  L   + +++    +S L
Sbjct: 27  LSRVKLLQEQSVVQLKKSCSEFWYSMSCVCFSLVFWFLTTIQSLLKMVVLQE--TLHSLL 84

Query: 412 MCLLPMKKY 438
           +  +P+ K+
Sbjct: 85  LWKIPVLKF 93


>UniRef50_P26190 Cluster: RNA-directed RNA polymerase subunit VP1;
            n=2; Rotavirus C|Rep: RNA-directed RNA polymerase subunit
            VP1 - Porcine rotavirus C (strain Cowden) (PoRV-C/Co)
          Length = 1082

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = -1

Query: 338  KSKILKHTHEMHKYKNITFFLRDFMTW*IRPLVRDKNITAKVER*GSFPITALERHNAQR 159
            KSKI  +  +  ++K+   FL   +T    P+V D     +  +  S+   ALE+   Q 
Sbjct: 787  KSKIADNIAKSPQFKSYVEFLNKSLTADENPIVSDGIKLTEKAKLNSYAPIALEKRRDQ- 845

Query: 158  *TFQLQQHFAQS-STLKSISVIREN--LY*I*GFNKLKLTV 45
              F +   F Q+ +T KS +V+  N  LY I GF K+  +V
Sbjct: 846  --FNMMVSFLQNPTTFKSETVVTINDVLYFISGFIKINSSV 884


>UniRef50_UPI000007BF02 Cluster: F56H1.3; n=1; Caenorhabditis
           elegans|Rep: F56H1.3 - Caenorhabditis elegans
          Length = 1101

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = -3

Query: 588 ISQNKLNLKVYSTDTFSIFQSCFGLVLLLKL*YTHYDFLFICRLMEL 448
           I+QNKL++K       ++F   F LVLLL   + ++  + +CR++EL
Sbjct: 23  INQNKLSIKDKFKKKLTMFSIPFALVLLL---FENFTIIVLCRIIEL 66


>UniRef50_Q8II83 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1789

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = -1

Query: 509  CY*NYNTHITIFYLFVD*WNCINKYFFIGNKHXXXXXXXXXXXXXXXLGKRLIFRNEKSK 330
            C+ NY   I IF    D WN I+  F + N                   K++I  N    
Sbjct: 1138 CFLNYKKKILIFNNICDNWNFISSLFLLNNPFFNKSFLDNIQMNYSEDDKKII-NNMMLD 1196

Query: 329  ILKHTHEMHKYKNITF 282
             + H   ++K KN+ F
Sbjct: 1197 FISHFCILNKQKNVFF 1212


>UniRef50_O76369 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 1174

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = -3

Query: 588 ISQNKLNLKVYSTDTFSIFQSCFGLVLLLKL*YTHYDFLFICRLMEL 448
           I+QNKL++K       ++F   F LVLLL   + ++  + +CR++EL
Sbjct: 23  INQNKLSIKDKFKKKLTMFSIPFALVLLL---FENFTIIVLCRIIEL 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,217,243
Number of Sequences: 1657284
Number of extensions: 10301774
Number of successful extensions: 20539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20528
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)