Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c17
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    31   0.20 
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.4  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   7.4  

>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 169 LCRSSAVIGKLP*RSTLAVIFLSRTKGLIYQVIKSLKKNVIFLYLCISCVCFNILLFSLR 348
           LC  SA I  +   +T+AV FL     +IY +   +K   +  Y+    +   +++FSL 
Sbjct: 150 LCGGSATISSVTGMNTVAVCFLLPVGVIIYTMFGGIKATFLTDYIHTVIILVILIMFSLA 209

Query: 349 KIS 357
             S
Sbjct: 210 TYS 212


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 250 LIYQVIKSLKKNVIFLYLCISCVCFNILLF 339
           LIY VI S  + V   +L  S +CF + LF
Sbjct: 33  LIYLVIHSQNELVSMSWLFRSTICFGVSLF 62


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 296 CIYAFRAYVLIFCFFHCE 349
           CI+    Y  +FCF HC+
Sbjct: 230 CIFCTNFYEPVFCFEHCK 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,468
Number of Sequences: 5004
Number of extensions: 49837
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)