Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c16
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    24   3.2  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    23   4.2  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    23   4.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   5.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    23   7.4  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 63  QVRL*GLSPLHACKSKTLKKK 1
           +++L G++PL+ C SK L  K
Sbjct: 326 KLQLAGVAPLYICNSKALANK 346


>SPBC1105.18c ||SPBC887.21c|peptide release
          factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 73 LKKTS*AVRTQSIACLQEQNFK 8
          L KT  +VR  + +CL E NF+
Sbjct: 9  LNKTFISVRLNAFSCLAELNFR 30


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 109 HCNLRDIQXKIYLKKTS 59
           HC L  +   +Y+KKTS
Sbjct: 509 HCGLLPVGQSVYVKKTS 525


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 139  TKNRKLHAKAHCNLRDIQXKIYLKKTS*AVRTQSIACLQEQ 17
            T+N K+H       +DI+ +I + +T      Q + CL  Q
Sbjct: 2251 TRNDKIHESIDQFFKDIRKQILIPQTLCDKIEQILPCLASQ 2291


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 17   LLLQACNGLSPYSLTC 64
            ++L  CN LSP+ + C
Sbjct: 1374 VILSVCNLLSPFEVVC 1389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,270
Number of Sequences: 5004
Number of extensions: 7013
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)