Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c16
         (191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0512 + 16675940-16677193,16677325-16677853,16678920-166789...    27   2.1  
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223...    27   2.1  
01_06_0143 - 26916490-26917719                                         26   4.9  

>04_03_0512 +
           16675940-16677193,16677325-16677853,16678920-16678999,
           16679450-16679533
          Length = 648

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 16  FALASMQWTESLQPNLFFLNIFXIECLANCNALLRAIC 129
           ++ A M W ES++      +   I C+ NCN+ + A+C
Sbjct: 144 YSTAGM-WKESVRVFKEMSSSGLIPCVVNCNSFIHALC 180


>02_01_0326 -
           2230617-2230735,2231430-2231493,2231646-2231849,
           2231945-2232016,2232293-2232458,2232543-2232758,
           2232873-2232949,2233056-2233151,2233237-2233280,
           2233435-2233522,2233805-2233886,2233961-2234091,
           2234264-2234350,2234804-2234887,2234985-2235144,
           2235251-2235414,2235757-2235762,2235823-2235879,
           2236159-2236278,2236387-2236496,2236587-2236689,
           2236789-2236842,2237106-2237168,2237258-2237325,
           2237412-2237469,2237684-2237750,2238233-2238309,
           2238433-2238516,2238652-2238828,2239010-2239144
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = +1

Query: 13  SFALASMQWTESLQPNLFFLNIFXIECLANCNALLRAICDSSF 141
           S     ++W  +++ +L   ++  + C A  +A +R++C ++F
Sbjct: 115 SILRTEVEWLNTIKADLVVSDVVPVACRAAADAGIRSVCVTNF 157


>01_06_0143 - 26916490-26917719
          Length = 409

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 37  WTESLQPNLFFLNIFXIECLANCNALLRAIC 129
           W++ L P L  + +  + CLA+  A   A+C
Sbjct: 9   WSDGLPPELLAIIVLQLNCLAD-RACFSAVC 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,537,669
Number of Sequences: 37544
Number of extensions: 38710
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)