Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c16
         (191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z66519-9|CAA91380.1|  448|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm recept...    25   7.4  
AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    25   7.4  

>Z66519-10|CAD59139.1|  446|Caenorhabditis elegans Hypothetical
           protein B0334.11b protein.
          Length = 446

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 46  SLQPNLFFLNIFXIECLANCNALLRAIC-DSSFXIMLINNAL 168
           +LQP +F LNIF +   A    +LR+I    +F I++++ AL
Sbjct: 143 TLQPFIFTLNIFILPAAA--FVVLRSIVRPRNFWILVLSTAL 182


>Z66519-9|CAA91380.1|  448|Caenorhabditis elegans Hypothetical
           protein B0334.11a protein.
          Length = 448

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 46  SLQPNLFFLNIFXIECLANCNALLRAIC-DSSFXIMLINNAL 168
           +LQP +F LNIF +   A    +LR+I    +F I++++ AL
Sbjct: 145 TLQPFIFTLNIFILPAAA--FVVLRSIVRPRNFWILVLSTAL 184


>U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm receptor
           protein 146 protein.
          Length = 334

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 50  YSLTCFF*IYFXLNVSQIAMRFCVQF 127
           Y++TC +   F L +S +A +FC ++
Sbjct: 85  YNITCLYCGSFALVISLLAAQFCYRY 110


>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 38  GLSPYSLTCFF*IYFXLNVSQIAMRFCVQF 127
           GLSP SLT F  +Y  L  + I M   VQF
Sbjct: 92  GLSPDSLTLFLVLYAVLYAATICM-LSVQF 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,720
Number of Sequences: 27780
Number of extensions: 43844
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)