Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c16
         (191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   5.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              19   7.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    19   7.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   7.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    18   9.4  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           18   9.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 118 AKAHCNLRDIQXKIYLKK 65
           AKAH +LRD +  I+  K
Sbjct: 18  AKAHYSLRDFKANIFQVK 35


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 49 RTQSIACLQEQNFKK 5
          R ++I CLQ   FK+
Sbjct: 51 RFEAIQCLQSSAFKE 65


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 74  FKKNKLGCKDSVH 36
           F K  L C+D VH
Sbjct: 110 FHKIALTCEDDVH 122


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 46  TQSIACLQEQNFKKK 2
           +Q IAC+ +QN + K
Sbjct: 243 SQVIACVGQQNVEGK 257


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 4/17 (23%), Positives = 13/17 (76%)
 Frame = -1

Query: 80  NIFKKNKLGCKDSVHCM 30
           ++ K+N + C++++H +
Sbjct: 381 SLLKENTVTCQEAMHML 397


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 38  GLSPYSLTCF 67
           GLS YSLT F
Sbjct: 198 GLSSYSLTEF 207


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 91  CLANCNALLRA 123
           C ANC++L +A
Sbjct: 35  CAANCHSLGKA 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,185
Number of Sequences: 438
Number of extensions: 406
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)