Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c15
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243     34   0.092
10_08_0418 - 17779499-17780952,17781177-17782017                       29   3.5  
11_01_0461 + 3569700-3572373,3572477-3572847                           29   4.6  

>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
          Length = 403

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 105 ISGHGNIPFIR-RLTLKQNINKCLGHVSAVSVVIIY 209
           ++ HGNIP  R R TLK  + +C G +S  S+ ++Y
Sbjct: 6   VTEHGNIPITRVRDTLKDGVVRCTGKISVSSLQVMY 41


>10_08_0418 - 17779499-17780952,17781177-17782017
          Length = 764

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 281 PLDPNHERTPRKTKKMMSRVKLKKRKGNP 367
           P+ P  ER P+K +K + R K +KRK  P
Sbjct: 609 PIGPPGERDPKKYQKRVVRNKYRKRKIEP 637


>11_01_0461 + 3569700-3572373,3572477-3572847
          Length = 1014

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 117 GNIPFIRRLTLKQN-----INKCLGHVSAVSVVIIYSNRKYGPLQTISACS 254
           GN+ F+R ++L++N     I   LGH+  + V+ + +N   G +   + CS
Sbjct: 94  GNLTFLRYISLQENLLAGQIPLSLGHMHHLKVLYLSNNTLQGEIPDFANCS 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,278
Number of Sequences: 37544
Number of extensions: 231445
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)