Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c15
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.3  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 379 IKELTDAMNKEILTLQEYADAMKS-QSSKDETNKESHLEQMAYTXXXXXXXXXXHS-EPT 552
           +  L D  N+  LTLQE ADA K  Q    E  K   L ++A +           S  P 
Sbjct: 379 VDRLMDETNQ--LTLQETADAFKDLQDKYYEEYKMYELGELASSFVGPKVKDCLISWNPL 436

Query: 553 WLPNQKAELSVNEKSLEEN 609
             P Q  +L    KS+ E+
Sbjct: 437 MQPKQPIKLFEQWKSILES 455


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 367 DSEYIKELTDAMNKE 411
           DS+YI+E T++ +KE
Sbjct: 685 DSQYIREQTESDDKE 699


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 1   ESFKFILEKS*EYRLACKLLI 63
           E  +FIL+   +YR++C L I
Sbjct: 53  EILQFILDVRLDYRISCLLSI 73


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 1  ESFKFILEKS*EYRLACKLLI 63
          E  +FIL+   +YR++C L I
Sbjct: 21 EILQFILDVRLDYRISCLLSI 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,908
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)