Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c14
         (480 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5KIM6 Cluster: Elongation factor 3; n=3; Basidiomycota...    33   3.3  
UniRef50_A3ZZZ0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  
UniRef50_P23678 Cluster: Kinesin-like protein unc-104; n=3; Caen...    32   5.8  

>UniRef50_Q5KIM6 Cluster: Elongation factor 3; n=3; Basidiomycota|Rep:
            Elongation factor 3 - Cryptococcus neoformans
            (Filobasidiella neoformans)
          Length = 1055

 Score = 33.1 bits (72), Expect = 3.3
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +2

Query: 296  ICLEKKTEILKKQSLACVATPEIGFMGDYIDVTHHKVCITHAVCSEADTRNKSH 457
            ICL++ T  L ++SLA +      F G  + +TH++   + ++C+E     + H
Sbjct: 929  ICLDEPTNYLDRESLAALIAALKNFEGGVLIITHNRE-FSESICTEVWAMREGH 981


>UniRef50_A3ZZZ0 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 286

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 320 ILKKQSLACVATPEIGFMGDYIDVTHHKVC---ITHAVCSEADTR 445
           ILKK  L C  T   GF+  + DV +H  C   +T A+ + AD +
Sbjct: 73  ILKKHGLVCALTSSHGFVKGWNDVANHDFCREKMTSAINATADAQ 117


>UniRef50_P23678 Cluster: Kinesin-like protein unc-104; n=3;
           Caenorhabditis|Rep: Kinesin-like protein unc-104 -
           Caenorhabditis elegans
          Length = 1584

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 296 ICLEKKTEILKKQSLACVATPEIGFMGDYID-VTHHKVCITHAVCSEADTRNKSHSLAA 469
           I  E+  ++L   S   +   E   +G Y+D +T   VC  H +C+  D  NK+ ++AA
Sbjct: 146 IYCERVKDLLNPNSGGNLRVREHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAA 204


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,216,653
Number of Sequences: 1657284
Number of extensions: 9999218
Number of successful extensions: 19332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19329
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)