Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c14
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    29   1.5  
01_01_0421 + 3181139-3184207                                           29   2.6  
12_01_0740 + 6646471-6649407                                           27   6.0  
12_01_0722 + 6355972-6359031                                           27   6.0  
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320...    27   7.9  

>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 347 RMQVTAFLIFLFFFPGKCISCRKLSFLPV*NNNIVSHLPVFPRWLIFVHHQIVDDYELLG 168
           R+   +F  F+   P    +CRKL  L +  N +  H+P +   L  +   ++   EL+G
Sbjct: 282 RVMCLSFNGFIGRIPPGLAACRKLQMLELGGNLLTDHVPEWLAGLSLLSTLVIGQNELVG 341

Query: 167 N 165
           +
Sbjct: 342 S 342


>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = -2

Query: 305 PGKCISCRKLSFLPV*NNNIVSHLP----VFPRWLIFV 204
           P    SCRKL  L + NN+I  + P     FPR  + V
Sbjct: 723 PRSIASCRKLEVLDIQNNHIADYFPCWMSAFPRLQVLV 760


>12_01_0740 + 6646471-6649407
          Length = 978

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 305 PGKCISCRKLSFLPV*NNNIVSHLPVFPRWL 213
           P   ++CR L  L + NN I  H   FP W+
Sbjct: 680 PRSLVACRNLEILDIGNNQISDH---FPCWM 707


>12_01_0722 + 6355972-6359031
          Length = 1019

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 305 PGKCISCRKLSFLPV*NNNIVSHLPVFPRWL 213
           P   ++CR L  L + NN I  H   FP W+
Sbjct: 721 PRSLVACRNLEILDIGNNQISDH---FPCWM 748


>01_01_0424 +
           3200223-3200634,3200677-3200836,3200987-3201342,
           3201958-3203252
          Length = 740

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 305 PGKCISCRKLSFLPV*NNNIVSHLPVFPR 219
           P   +SCRKL  L + NN I    P + R
Sbjct: 441 PRSLVSCRKLEVLDIQNNQINDSFPCWMR 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,209
Number of Sequences: 37544
Number of extensions: 266166
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)