Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c14
         (480 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC038118-1|AAH38118.1|  647|Homo sapiens TMC5 protein protein.         29   8.5  
BC027602-1|AAH27602.1|  760|Homo sapiens transmembrane channel-l...    29   8.5  
AY358155-1|AAQ88522.1|  948|Homo sapiens SAYY8238 protein.             29   8.5  
AY263164-1|AAP78779.1|  760|Homo sapiens TMC5 protein protein.         29   8.5  
AY236494-1|AAP69872.1|  760|Homo sapiens transmembrane channel-l...    29   8.5  
AK126695-1|BAC86646.1|  398|Homo sapiens protein ( Homo sapiens ...    29   8.5  
AK023655-1|BAB14629.1|  330|Homo sapiens protein ( Homo sapiens ...    29   8.5  
AK023048-1|BAB14374.1|  171|Homo sapiens protein ( Homo sapiens ...    29   8.5  

>BC038118-1|AAH38118.1|  647|Homo sapiens TMC5 protein protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 356 AWRRMQVTAFLIFLFFFP 303
           AWR  Q+  F IFL FFP
Sbjct: 467 AWRASQMMTFFIFLLFFP 484


>BC027602-1|AAH27602.1|  760|Homo sapiens transmembrane channel-like
           5 protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 356 AWRRMQVTAFLIFLFFFP 303
           AWR  Q+  F IFL FFP
Sbjct: 580 AWRASQMMTFFIFLLFFP 597


>AY358155-1|AAQ88522.1|  948|Homo sapiens SAYY8238 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 356 AWRRMQVTAFLIFLFFFP 303
           AWR  Q+  F IFL FFP
Sbjct: 826 AWRASQMMTFFIFLLFFP 843


>AY263164-1|AAP78779.1|  760|Homo sapiens TMC5 protein protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 356 AWRRMQVTAFLIFLFFFP 303
           AWR  Q+  F IFL FFP
Sbjct: 580 AWRASQMMTFFIFLLFFP 597


>AY236494-1|AAP69872.1|  760|Homo sapiens transmembrane channel-like
           protein 5 protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 356 AWRRMQVTAFLIFLFFFP 303
           AWR  Q+  F IFL FFP
Sbjct: 580 AWRASQMMTFFIFLLFFP 597


>AK126695-1|BAC86646.1|  398|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44741 fis, clone BRACE3027931. ).
          Length = 398

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 457 MRFIS-CVGFTTYCVCNTYFMMCN 389
           M+F S CV  +TYC+CN+   +CN
Sbjct: 252 MQFNSHCVCKSTYCICNSTHCVCN 275


>AK023655-1|BAB14629.1|  330|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13593 fis, clone PLACE1009493. ).
          Length = 330

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 356 AWRRMQVTAFLIFLFFFP 303
           AWR  Q+  F IFL FFP
Sbjct: 150 AWRASQMMTFFIFLLFFP 167


>AK023048-1|BAB14374.1|  171|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12986 fis, clone NT2RP3000055. ).
          Length = 171

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 457 MRFIS-CVGFTTYCVCNTYFMMCN 389
           M+F S CV  +TYC+CN+   +CN
Sbjct: 25  MQFNSHCVCKSTYCICNSTHCVCN 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,952,867
Number of Sequences: 237096
Number of extensions: 1598604
Number of successful extensions: 1976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)