Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c14
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    32   0.19 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    32   0.19 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    32   0.19 
Z70308-9|CAA94346.2|  402|Caenorhabditis elegans Hypothetical pr...    30   0.76 
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    29   2.3  
U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine rece...    28   4.0  
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 296 ICLEKKTEILKKQSLACVATPEIGFMGDYID-VTHHKVCITHAVCSEADTRNKSHSLAA 469
           I  E+  ++L   S   +   E   +G Y+D +T   VC  H +C+  D  NK+ ++AA
Sbjct: 146 IYCERVKDLLNPNSGGNLRVREHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAA 204


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 296 ICLEKKTEILKKQSLACVATPEIGFMGDYID-VTHHKVCITHAVCSEADTRNKSHSLAA 469
           I  E+  ++L   S   +   E   +G Y+D +T   VC  H +C+  D  NK+ ++AA
Sbjct: 146 IYCERVKDLLNPNSGGNLRVREHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAA 204


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 296 ICLEKKTEILKKQSLACVATPEIGFMGDYID-VTHHKVCITHAVCSEADTRNKSHSLAA 469
           I  E+  ++L   S   +   E   +G Y+D +T   VC  H +C+  D  NK+ ++AA
Sbjct: 146 IYCERVKDLLNPNSGGNLRVREHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAA 204


>Z70308-9|CAA94346.2|  402|Caenorhabditis elegans Hypothetical
           protein F49E11.7 protein.
          Length = 402

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 290 KYICLEKKTEILKKQSLACVATPEIGFMGDYIDVTHHKV-CIT 415
           + +C +   E  KK++          F+GDY+D  HH + CI+
Sbjct: 93  RVLCNQNSKEDAKKKAAYGFCNSRFVFLGDYVDRGHHSIECIS 135


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 362 FLAWRRMQVTAFLIFLFFFPGKCISCRKL-SFLPV*NNNIVSHLPVFPRWLIFVHHQIVD 186
           F+AW    + +F +FL FF     S R   SF P+  +   SH P     L+   + + +
Sbjct: 83  FIAWPTFNLGSFRVFLVFF---MTSDRVFASFFPIYYHKYRSHCPTATILLLMCAYTVFE 139

Query: 185 DYEL 174
            Y L
Sbjct: 140 QYIL 143


>U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine
           receptor, class v protein1 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 135 YNRTTISSLCITQ*FIIIYYLVMDKNKPP 221
           Y  T IS +C+    + +Y L +++N+PP
Sbjct: 14  YVSTAISLVCLPINILFVYILFVERNRPP 42


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 326 LIFLFFFPGKCISCRKLSFLPV*NNNIVSHLP 231
           ++ +F++  K +S +KLS + +  N I+ HLP
Sbjct: 109 IVHVFYYRYKILSHQKLSSVQIMRNFIIVHLP 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,931,176
Number of Sequences: 27780
Number of extensions: 261719
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)