Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c14
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            25   0.56 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.1  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 326 KKQSLACVAT----PEIGFMGDYIDVTHHKVCITH 418
           +K +  C+AT    PEI ++ D I++ HHK    H
Sbjct: 38  RKITFFCMATGFPRPEITWLKDGIELYHHKFFQVH 72


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 29  KGVSTTGGTYFLTLNKPSNRT---IHNAEFIST 118
           + ++TTG   +LT N  SN +   I  A  +ST
Sbjct: 715 QSLTTTGNVSYLTTNNTSNNSQLQIPRASLVST 747


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  SNRTIHNAEFIST*QRTMLQSHHHFVTLYYPVIH 181
           SN TIHN  +          ++++   LYY +I+
Sbjct: 85  SNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 80  SNRTIHNAEFIST*QRTMLQSHHHFVTLYYPVIH 181
           SN TIHN  +          ++++   LYY +I+
Sbjct: 85  SNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 216  PPREDW 233
            PPREDW
Sbjct: 1000 PPREDW 1005


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 115 NITKNYATIAPPFR 156
           N+T N  TI PP +
Sbjct: 958 NVTTNLTTILPPVK 971


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,056
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)