Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c12
         (374 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FVT6 Cluster: Similar to tr|Q07798 Saccharomyces cere...    33   1.3  
UniRef50_Q8DRQ9 Cluster: Putative uncharacterized protein; n=1; ...    32   3.0  
UniRef50_A0LNZ1 Cluster: Polypeptide-transport-associated domain...    32   3.9  
UniRef50_Q5FTG4 Cluster: Heavy-metal ion transporter HelA; n=1; ...    31   9.1  
UniRef50_Q5A698 Cluster: Potential mRNA decapping and decay fact...    31   9.1  

>UniRef50_Q6FVT6 Cluster: Similar to tr|Q07798 Saccharomyces
           cerevisiae YLL005c; n=1; Candida glabrata|Rep: Similar
           to tr|Q07798 Saccharomyces cerevisiae YLL005c - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 881

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 159 IYEVLAPAVVMMVILSLALCYYQVPQV---PFH*MKESPSFGLLFPEVVLRRY 10
           IY ++AP ++ + +LSL+L YY    +    F+    S + G L+PE + + Y
Sbjct: 699 IYSIIAPFILPLAVLSLSLVYYSFKYLFIYQFNSENISETHGKLYPEALSQLY 751


>UniRef50_Q8DRQ9 Cluster: Putative uncharacterized protein; n=1;
           Streptococcus mutans|Rep: Putative uncharacterized
           protein - Streptococcus mutans
          Length = 857

 Score = 32.3 bits (70), Expect = 3.0
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -3

Query: 213 TILKHNLLKILAFYGRDQIYEVLAPAVVMMVILSLALCYYQVPQV 79
           T++K  L+ + AFY   QIY  ++ ++V+M+  S AL  +   Q+
Sbjct: 113 TLIKFGLIGLSAFYSLGQIYTKISKSLVLMLSTSYALMSFTSSQL 157


>UniRef50_A0LNZ1 Cluster: Polypeptide-transport-associated domain
           protein, FtsQ-type; n=1; Syntrophobacter fumaroxidans
           MPOB|Rep: Polypeptide-transport-associated domain
           protein, FtsQ-type - Syntrophobacter fumaroxidans
           (strain DSM 10017 / MPOB)
          Length = 274

 Score = 31.9 bits (69), Expect = 3.9
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -3

Query: 192 LKILAFYGRDQIYEVLAPAVVMMVILSLALCYYQVPQVPFH*MKESPSFGL 40
           LKIL F+G+  +  +LA A V+++   L+  YY + + P+  ++E    GL
Sbjct: 16  LKILKFWGKTVLTLLLAVAAVVLISAGLSRSYYALLEAPWLRLEEVRINGL 66


>UniRef50_Q5FTG4 Cluster: Heavy-metal ion transporter HelA; n=1;
           Gluconobacter oxydans|Rep: Heavy-metal ion transporter
           HelA - Gluconobacter oxydans (Gluconobacter suboxydans)
          Length = 1025

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 225 SFSRTILKHNLLKILAFYGRD-QIYEVLAPAVVMMVILSLALCYYQVPQVPFH*MKES-P 52
           SF+  I+    L +L   G + +++  +A  V+M ++ SLA C+  VP +    M+ S P
Sbjct: 436 SFAILIIVMVYLPVLTLQGIEGKMFRPMAQTVIMALLTSLAYCFVCVPVLAVLVMRNSLP 495

Query: 51  SFGLLFPEVVLRRYD 7
                F   V R Y+
Sbjct: 496 DRETWFVRTVRRYYE 510


>UniRef50_Q5A698 Cluster: Potential mRNA decapping and decay factor;
           n=4; Saccharomycetales|Rep: Potential mRNA decapping and
           decay factor - Candida albicans (Yeast)
          Length = 785

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 112 RQNYHHHHRRSQHF 153
           +Q+YHHHH  SQH+
Sbjct: 285 QQHYHHHHNHSQHY 298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,467,380
Number of Sequences: 1657284
Number of extensions: 4523160
Number of successful extensions: 15061
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14653
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)