Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c12
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   6.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   9.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   9.0  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 221  NDVNFLVEIISHKLTSLSIYFIRYLSMYLM*SKQ 322
            ND+   +E+I H+ T L+  FI +   + +  KQ
Sbjct: 1404 NDILDALEVIGHEQTDLNHIFINFTPAFGLAPKQ 1437


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 277 LFYSLFVNVPNVIKANFTVNF 339
           LF+++F N   + + NFT++F
Sbjct: 333 LFFTIFTNAYKLRQTNFTLDF 353


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 40  KTKTWRFLHLMKRDLWYLIITES*RQNYHHHHR 138
           KT+  + +   +R L  LI   S  +++HHHH+
Sbjct: 455 KTEKEKKMSAPRRSLDKLIRIGSLHRHHHHHHK 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,317
Number of Sequences: 5004
Number of extensions: 20950
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)