Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c12
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713...    28   2.7  
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403...    27   6.3  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    26   8.4  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     26   8.4  
02_02_0310 - 8842286-8843314                                           26   8.4  

>05_01_0012 -
           70296-70398,70494-70648,70737-70843,71138-71216,
           71343-71423,71556-72581
          Length = 516

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 43  TKTWRFLHLMKRDLWYLIITES*RQNYHHHHRRSQHFVDLVASIKRQ 183
           T+  R LH  KR +   +  E   +N+HHHH    H +  V   +RQ
Sbjct: 248 TRFRRGLHARKR-IMAALREEMAARNHHHHHHHHHHDLLSVLMQRRQ 293


>02_01_0548 +
           4035265-4035431,4035517-4035651,4035859-4036081,
           4036282-4036468,4036627-4036811,4037435-4037572,
           4037995-4038123
          Length = 387

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +1

Query: 61  LHLMKRDLWYLIITES*RQNYHHHHRRSQHFVDLVASIKR 180
           + +M+ D+ YL+  E  +  ++   R ++HF+  ++  +R
Sbjct: 174 VEVMENDVLYLVSLEGQKTGFYADQRENRHFISTLSKDQR 213


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  KTWRFLHLMKRDLWYLIIT 102
           KTW FL  + RDLW   I+
Sbjct: 575 KTWIFLQPLSRDLWVATIS 593


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 112 RQNYHHHHRRSQ 147
           RQ +HHHH+R Q
Sbjct: 146 RQRHHHHHQRQQ 157


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 112 RQNYHHHHRRSQHFVD 159
           R+++HHHHR   H  D
Sbjct: 184 RRSHHHHHRHHHHHHD 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,281,224
Number of Sequences: 37544
Number of extensions: 112232
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)