Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c10
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical pr...    46   6e-06
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    29   1.2  
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    28   2.2  
Z99288-7|CAB63421.1|  362|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    27   3.8  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    27   3.8  
AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z92808-4|CAD54148.1|  928|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81476-15|CAD54124.1|  928|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical p...    26   8.7  
U41012-2|AAV28364.1|  411|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U41012-1|AAA82294.3|  397|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical
           protein T13F2.2 protein.
          Length = 124

 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
 Frame = +3

Query: 57  AEKKAKMADRTNDKEPTWVLQ--GKKLLKVREFKGKVYVDIREFY--EKNGELLPGKKGI 224
           A+ + +++ R  D +   + +    +   V +FKGK YV+IRE+Y    + +++P +KGI
Sbjct: 44  AKNEEEVSGRLKDSDGNEMFEIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRKGI 103

Query: 225 SLTPEQWRKLLSVGEEVNE 281
           SL+  QW  L  +  E+++
Sbjct: 104 SLSKAQWANLKDLIPEIDK 122


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 248 SPLFWSETYPFFTW*KFTILFIKFSYVY 165
           +P+FW + YPFF   +F   F  F  V+
Sbjct: 373 TPIFWEKIYPFFRIFRFFSNFYTFPVVF 400


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 213 KKGISLTPEQWRKLLSVGEEVNETVSSMC 299
           KK ++  P   R+L +  E  NET+SS C
Sbjct: 251 KKDLASNPRALRRLRTACERANETLSSSC 279


>Z99288-7|CAB63421.1|  362|Caenorhabditis elegans Hypothetical
           protein ZK262.8 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -1

Query: 188 FIKFSYVYIYFSFEFSDFQ*FLAL*HPCWLFIISPVCHFCLFFSRRVPQNNRKDALSHQN 9
           F+  +YV+++F   F DF        P +LF+I P      ++  + P +NRK AL H  
Sbjct: 10  FLGLAYVFVHFLTPFDDF--------PSFLFVIFP------WYRTKQP-DNRKRALHHPR 54

Query: 8   VK 3
           ++
Sbjct: 55  LR 56


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
          protein T05G11.1 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 80 CHFCLFFSRRVPQN 39
          CH CL  +RR+P+N
Sbjct: 38 CHMCLLCNRRIPEN 51


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
          protein T05G11.1 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 80 CHFCLFFSRRVPQN 39
          CH CL  +RR+P+N
Sbjct: 38 CHMCLLCNRRIPEN 51


>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 98  RANMGVTGQEITESPRIQRKSICRHKRIL*KE 193
           RA +  T QE+ E+ R+Q K I  H+  L K+
Sbjct: 613 RAQVQTTQQELNETIRLQMKQILDHQNALVKK 644


>Z92808-4|CAD54148.1|  928|Caenorhabditis elegans Hypothetical
           protein M04C3.1b protein.
          Length = 928

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 60  EKKAKMADRTNDKEPTWV---LQGKKLLKVREFKGKVYVDIR----EFYEKNGELLPGKK 218
           E K +   RT +   T++   +Q  K  + R+F   ++  I     EF++KN E+ P K 
Sbjct: 614 EAKERSFFRTEENHFTFLTSAIQASKADEYRQFSNNMWQSIDSYTYEFFDKNFEIWPVKN 673

Query: 219 GISLTPEQWRKLLSVG 266
             SL  E+  +++ +G
Sbjct: 674 DESL--EEMYEMMCLG 687


>Z92808-3|CAB07268.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 60  EKKAKMADRTNDKEPTWV---LQGKKLLKVREFKGKVYVDIR----EFYEKNGELLPGKK 218
           E K +   RT +   T++   +Q  K  + R+F   ++  I     EF++KN E+ P K 
Sbjct: 614 EAKERSFFRTEENHFTFLTSAIQASKADEYRQFSNNMWQSIDSYTYEFFDKNFEIWPVKN 673

Query: 219 GISLTPEQWRKLLSVG 266
             SL  E+  +++ +G
Sbjct: 674 DESL--EEMYEMMCLG 687


>Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical
           protein F01D5.8 protein.
          Length = 305

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 159 VYVDIREFYEKNGELLPGKK 218
           VY D+R  YEK  E+ P KK
Sbjct: 132 VYADVRAVYEKILEMRPDKK 151


>Z81476-15|CAD54124.1|  928|Caenorhabditis elegans Hypothetical
           protein M04C3.1b protein.
          Length = 928

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 60  EKKAKMADRTNDKEPTWV---LQGKKLLKVREFKGKVYVDIR----EFYEKNGELLPGKK 218
           E K +   RT +   T++   +Q  K  + R+F   ++  I     EF++KN E+ P K 
Sbjct: 614 EAKERSFFRTEENHFTFLTSAIQASKADEYRQFSNNMWQSIDSYTYEFFDKNFEIWPVKN 673

Query: 219 GISLTPEQWRKLLSVG 266
             SL  E+  +++ +G
Sbjct: 674 DESL--EEMYEMMCLG 687


>Z81476-14|CAB03924.1|  946|Caenorhabditis elegans Hypothetical
           protein M04C3.1a protein.
          Length = 946

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 60  EKKAKMADRTNDKEPTWV---LQGKKLLKVREFKGKVYVDIR----EFYEKNGELLPGKK 218
           E K +   RT +   T++   +Q  K  + R+F   ++  I     EF++KN E+ P K 
Sbjct: 614 EAKERSFFRTEENHFTFLTSAIQASKADEYRQFSNNMWQSIDSYTYEFFDKNFEIWPVKN 673

Query: 219 GISLTPEQWRKLLSVG 266
             SL  E+  +++ +G
Sbjct: 674 DESL--EEMYEMMCLG 687


>U41012-2|AAV28364.1|  411|Caenorhabditis elegans Hypothetical
           protein C06A6.4b protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 262 TDNNFLHCSGVRLIPFLPGKSSPFFS*NSLMSTYTFPLNSRTF 134
           TD+ F+   G+R I F P  ++P     SL+  +   LN +TF
Sbjct: 356 TDSRFVRAQGIRAIGFSPIINTP-----SLLHDHNEFLNEKTF 393


>U41012-1|AAA82294.3|  397|Caenorhabditis elegans Hypothetical
           protein C06A6.4a protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 262 TDNNFLHCSGVRLIPFLPGKSSPFFS*NSLMSTYTFPLNSRTF 134
           TD+ F+   G+R I F P  ++P     SL+  +   LN +TF
Sbjct: 342 TDSRFVRAQGIRAIGFSPIINTP-----SLLHDHNEFLNEKTF 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,774,487
Number of Sequences: 27780
Number of extensions: 150419
Number of successful extensions: 406
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)