Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c08
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q28RL8 Cluster: TRAP transporter 4TM/12TM fusion protei...    34   3.0  
UniRef50_Q3YQV4 Cluster: Pentapeptide repeat domain protein; n=6...    34   4.0  
UniRef50_A6LZM3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.3  

>UniRef50_Q28RL8 Cluster: TRAP transporter 4TM/12TM fusion protein;
           n=2; Rhodobacteraceae|Rep: TRAP transporter 4TM/12TM
           fusion protein - Jannaschia sp. (strain CCS1)
          Length = 848

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 709 VVIGLFLIYYFSVTLLIYLLFYSNVYTISRI*APNNKDAQITA-SVSISETFLNIFVLF 536
           ++ G+FLIY F+  LL  +L   N Y   R       DA I   + ++S T++ +F++F
Sbjct: 259 IITGIFLIYTFTAHLLPGILAVQNPYDWQRFFGFVYTDAGILGPTTAVSSTYIILFIIF 317


>UniRef50_Q3YQV4 Cluster: Pentapeptide repeat domain protein; n=6;
           canis group|Rep: Pentapeptide repeat domain protein -
           Ehrlichia canis (strain Jake)
          Length = 635

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 131 GLHLCTVIFNFERIKSSNLKNSQRKNVCMQTDNIETKSI 247
           GL L  V F+F  ++SS+ KNSQ KNV     N+E   +
Sbjct: 573 GLKLENVNFSFADLQSSHFKNSQLKNVDFSNANLENADL 611


>UniRef50_A6LZM3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium beijerinckii NCIMB 8052|Rep: Putative
           uncharacterized protein - Clostridium beijerinckii NCIMB
           8052
          Length = 410

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 688 IYYFSVTLLIYLLFYSNVYTISRI*APNNKDAQITASVSISETFLNIFVLFC 533
           I + SV +LIY L    V+T+S I   NN+  ++    S+  +  NI  +FC
Sbjct: 287 IRFESVKVLIYTLLSFGVFTLSFIYLINNRKREVGILYSLGASKKNIIFMFC 338


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,716,495
Number of Sequences: 1657284
Number of extensions: 11210903
Number of successful extensions: 28167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28131
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)