Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c07
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    29   0.95 
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   2.2  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    27   2.9  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    26   5.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   8.9  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 619 SDKPSLKTASFQGPKRRRGSGRANWQHNHQTST 521
           S  P+L  ASF+ PKR +GS      H  +  T
Sbjct: 293 SSSPTLTNASFESPKRGKGSNDLPENHPQRRQT 325


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 514 PNPLTFGGCVASSLYRTPDVALG 582
           PN   + GCV +  YR+P++ LG
Sbjct: 206 PNRREYTGCVVTRWYRSPELLLG 228


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 435 FLFNFHLGNESTLLYHRIIYLFI 367
           FL   +    S + YHRI+Y+FI
Sbjct: 52  FLMQLYAPKNSEISYHRILYIFI 74


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 496 ARAISMPNPLTFGGCVASSLYRTPDVALGLESSRSSMKVY 615
           AR+I +P   TF   V +  YR PDV LG     +S+ ++
Sbjct: 148 ARSIGIPVN-TFSNEVVTLWYRAPDVLLGSRVYSTSIDIW 186


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 267 IGVLVNFSYLAFRANGKRVFSRARI 341
           IG +  F+Y+   A GKR    AR+
Sbjct: 167 IGAIHGFAYIGLAAQGKRALLTARV 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,545
Number of Sequences: 5004
Number of extensions: 47854
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)