Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c06
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    27   0.26 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   5.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    23   5.5  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 1   WLRVVASAHDAYELRYF 51
           WLRVV++    YELRY+
Sbjct: 90  WLRVVSTKKGVYELRYY 106


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  LSYSYNKIVLHNPKKK 137
           L  S NK+  HNPK K
Sbjct: 517 LRLSSNKVFYHNPKNK 532


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 123  CVKLFYCMNSLILIVFVIAVSVD 55
            C++ F C    +L+ F+ A SV+
Sbjct: 1627 CIQFFRCNLEAVLVAFLEAASVN 1649


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 123 CVKLFYCMNSLILI 82
           CV LFYC+++ +L+
Sbjct: 131 CVYLFYCISTNVLV 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,952
Number of Sequences: 5004
Number of extensions: 3786
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)