Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c03
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...   182   4e-47
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    31   0.24 
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    28   1.7  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.9  
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    25   9.1  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score =  182 bits (444), Expect = 4e-47
 Identities = 87/196 (44%), Positives = 121/196 (61%)
 Frame = +3

Query: 180 ILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESKKVYPCGIREFAAHIF 359
           +LDDL +RFI+NLPAE++ ++ R+CFQIE AHWFY D+    ++ ++   G+R F+A +F
Sbjct: 11  VLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRA-QNDQLPSLGLRVFSAKLF 69

Query: 360 QHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWTKASWGFPKGK 539
            H P L +     +   D++  YK  +P  GAI         +LV+ +   + WGFPKGK
Sbjct: 70  AHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGK 129

Query: 540 VNEDEEPWKCATREVLEETGFDISNLINKNDYIEAVTHDQIARLYIIGNIPRDTKFQPRT 719
           +++DE    CA REV EETGFD S+ IN N++I+     Q  RLYII  I  DT+F+ RT
Sbjct: 130 IDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRT 189

Query: 720 RNEIKACEWFPLADLP 767
           R EI   EW  L DLP
Sbjct: 190 RKEISKIEWHNLMDLP 205


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 19/50 (38%), Positives = 21/50 (42%)
 Frame = +3

Query: 450 GAIXXXXXXSHVLLVQSYWTKASWGFPKGKVNEDEEPWKCATREVLEETG 599
           G +        VLLV S     SW  PKG    DE   + A RE  EE G
Sbjct: 46  GVVALSADKRKVLLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGG 95


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 34/157 (21%), Positives = 67/157 (42%), Gaps = 13/157 (8%)
 Frame = +3

Query: 333 IREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQ-SYWT 509
           + E+   +  + P  R  V+ + A  ++ +++    P +          +VLL+Q S+  
Sbjct: 14  LSEYCPRVTPNAPPRRASVAVIIAFKES-QDFSN--PKWPQCIPITSVPYVLLIQRSFRD 70

Query: 510 KASWG----FPKGKVN-EDEEPWKCATREVLEETGFDI----SNLINKNDYIEAVTHDQI 662
              W      P G  +  D+   + A RE LEE G D+    ++ +   D     ++   
Sbjct: 71  TDRWSGHMALPGGTRSLTDKSDIQTAHRETLEEVGIDLRKEHAHFVGALDERVITSNWGQ 130

Query: 663 ARLYIIGNIPRDTKFQPRTR---NEIKACEWFPLADL 764
             L ++ +      + P  R   +E+ + +W+PLADL
Sbjct: 131 FPLLLLSSFVFILPYMPSLRLQESEVFSAQWYPLADL 167


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 348 LQTL*YHRGILSSIRQCSNNPNKTNEPI 265
           LQTL  HR I+ S+   S++PN   +PI
Sbjct: 299 LQTLEQHRKIMLSLIPLSSSPNHPIQPI 326


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 492 VQSYWTKASWGFPKGKVNEDEE 557
           +Q     A W +P+GKV+E +E
Sbjct: 29  IQLSLNSAKWEYPEGKVHETQE 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,590
Number of Sequences: 5004
Number of extensions: 70013
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)