Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c02
         (798 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IPJ1 Cluster: CG17377-PC, isoform C; n=6; melanogaste...    64   5e-09
UniRef50_A7I2Q2 Cluster: Putative uncharacterized protein; n=1; ...    35   2.7  

>UniRef50_Q8IPJ1 Cluster: CG17377-PC, isoform C; n=6; melanogaster
           subgroup|Rep: CG17377-PC, isoform C - Drosophila
           melanogaster (Fruit fly)
          Length = 287

 Score = 63.7 bits (148), Expect = 5e-09
 Identities = 28/51 (54%), Positives = 32/51 (62%)
 Frame = +2

Query: 260 RTSKSRELRGSILYTDCFCLRRNGLQYDCRRSGCQGSQLCQTLPRPLCEPA 412
           R  +SRELR  I+YT C C++RNGLQ  C RS CQG   C   P P C PA
Sbjct: 11  RGCRSRELRCGIMYTTCDCVKRNGLQDKCPRSACQGRPACLCFPFPTCGPA 61


>UniRef50_A7I2Q2 Cluster: Putative uncharacterized protein; n=1;
           Campylobacter hominis ATCC BAA-381|Rep: Putative
           uncharacterized protein - Campylobacter hominis (strain
           ATCC BAA-381 / LMG 19568 / NCTC 13146 /CH001A)
          Length = 165

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 115 IYILVLFLYFEFWKFIKCAFAESSLKFCINHF 20
           I++  +FL+F F+ FIK  F +  + FCIN F
Sbjct: 65  IFVYWIFLFFLFYGFIKYGFFDKFIDFCINIF 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,182,297
Number of Sequences: 1657284
Number of extensions: 12160356
Number of successful extensions: 28142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28136
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)