Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c01
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.44 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.1  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   5.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 642  PTVSEWAPGVL*LPSQAVLLPDVSRAPRKYSQPC 541
            PT + W      +P  AV++P+V     K SQPC
Sbjct: 1074 PTTTNWPTQGTTIPPPAVVMPEVD----KPSQPC 1103



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 635  CQSGHLVCSSCRPKLSCCP 579
            C +GHLV  +C P L   P
Sbjct: 1224 CVNGHLVPQNCAPGLHYNP 1242


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 44  VNSC*SSFCIIG*TCK-ATSHF 106
           +N C SS C+ G TC+  T+H+
Sbjct: 62  INLCDSSPCLNGATCQDHTTHY 83


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +1

Query: 433 SQASSCSAFSVC-TRVTVQ 486
           S+ S+C  FSVC  RV+ Q
Sbjct: 145 SRTSACGLFSVCYPRVSAQ 163


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 663 RLCAAPHPTVSEWAPGVL 610
           R C  P+P  ++W  G L
Sbjct: 257 RYCYRPYPVYNQWWSGPL 274


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   ECLKFFA*ELFCWFCKFLLIEFL 69
           +CL FF   L  ++C+   ++FL
Sbjct: 63  KCLAFFCTALVIFYCQEGSVDFL 85


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   ECLKFFA*ELFCWFCKFLLIEFL 69
           +CL FF   L  ++C+   ++FL
Sbjct: 296 KCLAFFCTALVIFYCQEGSVDFL 318


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   ECLKFFA*ELFCWFCKFLLIEFL 69
           +CL FF   L  ++C+   ++FL
Sbjct: 296 KCLAFFCTALVIFYCQEGSVDFL 318


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 341 LSFEQLYLNYSTSHIYVRWM 400
           L F   +LN S+  IY +W+
Sbjct: 569 LLFGGFFLNVSSIPIYFKWL 588


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 341 LSFEQLYLNYSTSHIYVRWM 400
           L F   +LN S+  IY +W+
Sbjct: 569 LLFGGFFLNVSSIPIYFKWL 588


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,100
Number of Sequences: 336
Number of extensions: 3545
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)