Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6c01
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    32   0.090
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    27   3.4  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    26   5.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   5.9  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   5.9  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -1

Query: 683 FECPVCFDYVLPPILQCQSGHLVCSSCRPKL 591
           F C VC D  L P+     GH  C  C   L
Sbjct: 604 FNCSVCLDPCLAPVFIIPCGHFTCQECMSML 634


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 155 NLFILQNLSNPFLRSSFVIICYKLCSQ 235
           ++ IL N S P++R   +++ Y+LC Q
Sbjct: 139 DVLILLNHSVPYVRKRTILLLYRLCLQ 165


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 415 QEYGLNSQ--ASSCSAFSVCTRVTVQPVLECLQGNITLL 525
           Q  GL+SQ  A   S  S  TRV+V+  + CL GN   L
Sbjct: 46  QMSGLSSQNVAMIFSKRSTRTRVSVESAVSCLGGNAMFL 84


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 680 ECPVCFDYVLPPILQCQSGHLVCSSC 603
           +C +C D V   ++    GH +C  C
Sbjct: 745 QCSLCMDVVAELLIIVPCGHFLCREC 770


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 122 SLKIFSCI*NTNLFILQNLSNPFLRSSFV 208
           +L  +SC+ +T   IL NL NP L S+F+
Sbjct: 342 NLSDYSCVSDTTTEILSNLENP-LSSNFL 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,205
Number of Sequences: 5004
Number of extensions: 54705
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)