Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b23
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.47 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    25   0.63 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   3.3  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   7.7  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   7.7  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   7.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 123 FKSLLLRIKSIKTFEISCFNHTFQVRVL 40
           F  LLLR+ ++++  + C  H F  +++
Sbjct: 361 FAKLLLRLPALRSIGLKCLEHLFFFKLI 388


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 323 ICQLIN*ITLFRNFNFCISHFS 258
           +CQ+ N I  F+NF F +S FS
Sbjct: 224 LCQVANSIYGFQNFLFVLSTFS 245


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -3

Query: 230 QFLVTSNSCDNKLFVNKICTHVRLYRRKVKCMALNCLNPYFY 105
           Q  +  ++C+  + +       R  RR     A   LN YFY
Sbjct: 209 QMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFY 250


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 257 GLRIEEKLFQFLVTSNSCDNKLFVNKICTH 168
           G+R   K    LV S  C   LFV   C+H
Sbjct: 275 GIRFSFKEIGLLVDSTYCLFLLFVFCDCSH 304


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 257 GLRIEEKLFQFLVTSNSCDNKLFVNKICTH 168
           G+R   K    LV S  C   LFV   C+H
Sbjct: 275 GIRFSFKEIGLLVDSTYCLFLLFVFCDCSH 304


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 257 GLRIEEKLFQFLVTSNSCDNKLFVNKICTH 168
           G+R   K    LV S  C   LFV   C+H
Sbjct: 275 GIRFSFKEIGLLVDSTYCLFLLFVFCDCSH 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,169
Number of Sequences: 336
Number of extensions: 2792
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)