Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b23
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1027 - 33602170-33602622,33602912-33603013                       31   0.90 
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   6.3  

>02_05_1027 - 33602170-33602622,33602912-33603013
          Length = 184

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 484 LIFHPTLLNPDINPCFFLG*FLIGQCLE 567
           L+ HP +++P IN C F   F +G C++
Sbjct: 19  LVMHPLIMHPRINQCKFDREFWVGPCVD 46


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 427 KLNLLTLSFKLSSCIRWEKILNSEFTTGSLHARRG 323
           K +L  +S  LSSC RW++ L   + +  +   RG
Sbjct: 6   KFSLSLISIALSSCSRWQQELGPAYLSTKVRVVRG 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,667
Number of Sequences: 37544
Number of extensions: 244561
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)