Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b23
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92786-8|CAB07210.1|  325|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z47809-3|CAA87781.2|  322|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    28   5.7  
U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z92786-8|CAB07210.1|  325|Caenorhabditis elegans Hypothetical
           protein F47H4.11 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 517 YQGLGVSDERLSILRIKPLFKNNFKSIFHQKLNLLTLSFKLSSCIRWEKILNSEFTT 347
           Y G G  + + +ILR   LF  NF  +   +  LL ++      I W++ LN+  +T
Sbjct: 122 YSGQGAEEIKENILRTHELFLYNFGEMLKSRKFLLKVA--AFDVILWKEPLNNHLST 176


>Z47809-3|CAA87781.2|  322|Caenorhabditis elegans Hypothetical
           protein F42A8.3 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 118 FKQF----KAIHLTFRLYKRTCVHILLTNNLLSHEFDVTR 225
           FKQF    K ++  + L  RTC  ++  N LLS+  D+++
Sbjct: 80  FKQFEYETKNLNNVYSLDNRTCSQVIYDNYLLSYSTDISK 119


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 180 NMHT-RTLIQTKS*MYGFKLFKSLLLRIKSIKTFEISCFNHTFQVRVLRPFCNRLKA 13
           N+ T R    T+  M+G    + L L    I++F IS ++HT +++ L    NR+++
Sbjct: 273 NLSTNRVQAVTEGWMFGLTSLEVLDLSYNQIQSFHISSWSHTPKLKWLSLHSNRIQS 329


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 180 NMHT-RTLIQTKS*MYGFKLFKSLLLRIKSIKTFEISCFNHTFQVRVLRPFCNRLKA 13
           N+ T R    T+  M+G    + L L    I++F IS ++HT +++ L    NR+++
Sbjct: 273 NLSTNRVQAVTEGWMFGLTSLEVLDLSYNQIQSFHISSWSHTPKLKWLSLHSNRIQS 329


>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
           protein F13H8.2 protein.
          Length = 929

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = -3

Query: 224 LVTSNSCDNKLFVNKICTHVRLYRRKVKCMALNCLNPYFYV*NRLK 87
           L+  +SC  + +  ++CTHV +Y  ++    +   + Y  +  ++K
Sbjct: 822 LLAISSCTQQQYKAELCTHVAVYLTRIHLSHITASSDYVPIFEQMK 867


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,063
Number of Sequences: 27780
Number of extensions: 259412
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)