Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b17
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    40   2e-05
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 5/207 (2%)
 Frame = +3

Query: 48  KTVLITGANRGLGLGMVKYLTHCKKSQRIIATCRNESEE---LKQLSEKNHNVTILHLDV 218
           +  L+TGAN G+G  +++ L    K  ++I       +    +++L  K   +  L  D+
Sbjct: 8   EVALVTGANSGIGKCLIECLV--GKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDL 65

Query: 219 TNFSGYDNLTAQIKNIVGDQGLNLLINNAGITTKFTKLGLVKTEQLMDNLTVNTVAPIML 398
           +N +    +   ++  +G   +++LINNA I    T    ++ ++++D   +  +  + L
Sbjct: 66  SNQNDILKVIEWVEKNLG--AIDILINNATINIDVT----LQNDEVLDWKKIFDINLLGL 119

Query: 399 TKSLLPLLKRAAELYSGEAVGVERAAVINMSSVLGSIAQNDQGGFYPYRCSKAALNAATK 578
           T  +  +LK        +  G+    ++N++   G            Y  SK AL   T 
Sbjct: 120 TCMIQEVLKLM------KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTD 173

Query: 579 SMSIDLK--KESILVACMHPGWVKTDM 653
            +  +L   + +I V  + P  V+TDM
Sbjct: 174 CLRSELAQCESNIKVISISPDLVETDM 200


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 528 GFYPYRCSKAALNAATKSM 584
           G  P++C K + +   KSM
Sbjct: 13  GSKPFKCEKCSYSCVNKSM 31


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 650 VGLNPAGMHTSNEDALLLQVDAH 582
           VG+NP  M   N    LLQ++ +
Sbjct: 460 VGINPGKMQLKNIIKKLLQINCY 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,351
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)