Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b11
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   3.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   4.9  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   4.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   6.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   6.5  

>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 201 LKASRRLIVYG--NGRRITHSQNVL--CVLQMRGLLSM 302
           LKA RRL+V+G  N      S+ +L  C +  R LLSM
Sbjct: 218 LKACRRLVVFGFQNPSESEFSERMLAFCAVHQRKLLSM 255


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 347 SDCLTCAVLTCASKPIACKCVS----CIIKKMNYYFTSQQVYFYKAALLIKAIS 496
           S C T   LTC++     +C +    C+ K+  YY TS    F   ++ +  I+
Sbjct: 441 SSCSTAPHLTCSADAQKKECQALGGTCLYKRDGYYLTSIVGIFLAISICVSLIT 494


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 386 KPIACKCVSCIIKKMNYYFTSQQVYFYKAALLIKAIS 496
           KPI  K VSC  + + Y  +  QVY Y+ +   K  S
Sbjct: 67  KPIT-KVVSCATQDIFYALSDSQVYVYQISTFKKLFS 102


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 469 GGFIDKSNLF*TIVLSSIEILKKVQQVISSVESGNHLTP 585
           GG ID  N      LS  E+LK +  ++  V S ++L P
Sbjct: 119 GGLIDFMNQRLQTRLSEHEVLKIISDIVQGVASLHYLRP 157


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 35  KNCIWRKIKHTTMIELPKIERNVNNTQDLCKC 130
           K   WRK K T++  +PK   +++ + D C+C
Sbjct: 593 KEFFWRK-KATSVCSVPKSITDLHGSFDACEC 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,424
Number of Sequences: 5004
Number of extensions: 65938
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)