Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6b11
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 0.73
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 30 2.2
11_01_0796 - 7000747-7001193 29 2.9
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 2.9
01_05_0380 - 21633505-21634563,21634626-21634677,21636263-216363... 29 3.9
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 5.2
10_02_0015 + 4243218-4243420,4243553-4243745,4243818-4243898,424... 29 5.2
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 29 5.2
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 6.8
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 28 6.8
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 6.8
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -1
Query: 184 SLLNLTFPLSSSTLANGTAFAQILRIIHISFNFW-KLYHC--CMFNFSPNTIL 35
S +NL+F ++LAN FA L IH++ N W + +C C F+ S T L
Sbjct: 578 SHINLSFTFQPNSLAN-YVFASCLAFIHLNLNGWCRAANCIVCEFDVSGATAL 629
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +2
Query: 335 RGPTSDCLTCAVLTC----ASKPIACKCVSCIIKKMNYYFTSQQVYFYKAA 475
+G +DCL A L C A KP+A + + K Y T Q+Y YK++
Sbjct: 489 KGLEADCLVYATLACAYLTAGKPVAALDILNEMAKKQLYIT-PQIYNYKSS 538
>11_01_0796 - 7000747-7001193
Length = 148
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 302 APQASMHPGTPRGPTSDCLTCAVLTCASKPIACKCV 409
+P M G P S C+ C V+ A P C CV
Sbjct: 35 SPMLCMRRGLLLHPASCCIACRVVVRAVLPFQCTCV 70
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +2
Query: 5 KLQHHNINVIKNCIWRKIKHTTMIELPKIERNVNNTQDLCKCRPICKSRRREWKGQVQQT 184
++ +N ++K ++++KH + ELP ++R + K I R W +
Sbjct: 981 RVDDNNQELLKTIKFQELKHIHLHELPSLQRICGHRIVAPKLETI--KIRGCW-SLTRLP 1037
Query: 185 SAELLLESKPKVDCLRKW 238
+ L KPKVDC ++W
Sbjct: 1038 AVGLDSTRKPKVDCEKEW 1055
>01_05_0380 -
21633505-21634563,21634626-21634677,21636263-21636310,
21636349-21637289,21638737-21638982
Length = 781
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 287 PHLQNAQHILTVRNAPAISVNNQP 216
PHL+N++H T RN ++ N P
Sbjct: 287 PHLENSEHQATSRNGSSVKFQNPP 310
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = -3
Query: 341 VLSASRGAYSLAVHGQQAPHLQNAQHILTVRNAPAISVNNQPSACFQVTIRLKFAEP 171
++SA A + Q+ H+ + + SVNN P + ++LKF P
Sbjct: 631 IVSAMENASESGTRSRSFGQKQSVNHLTENQGNASFSVNNSPDSLKPSLLKLKFKRP 687
>10_02_0015 +
4243218-4243420,4243553-4243745,4243818-4243898,
4244267-4244377,4244921-4245211,4245301-4245363,
4245571-4245636,4245761-4245979
Length = 408
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 125 KCRPICKSRRREWKGQVQQTSAELLLESKPKVDCLRKWPAHYAQSKCVVRSADA 286
K + KSR+R + SA + + K K+ CL + A Y +CVVR+ A
Sbjct: 245 KDKDAIKSRKRAVTPPPSRVSAREIYQQK-KIKCLERDNASYRGLECVVRALAA 297
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 143 CKWDGICTDLAYYSHFFQFLEALSLLYV*FFA 48
C W G C Y FF F+ + +LL V FA
Sbjct: 190 CPWVGQCIGKRNYRFFFMFVSSTTLLCVYVFA 221
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 162 HSRLRLLQMGRHLHRSCVLFTFLSIFGSSIIVVCLIF 52
H RL + GR + VL L + S IIV+C+ F
Sbjct: 2050 HLRLASIDAGRRTKINAVLKVVLPVLSSIIIVLCMSF 2086
>03_06_0311 +
33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Frame = +2
Query: 17 HNINVIKNCIWRKIKHTTMIELPKI----ERNVNNTQDLCKCRPICKSRRREWKGQV--- 175
H I NC+ ++ H+ +I R V N + +C K + R
Sbjct: 31 HTSYGIFNCVLFRVDHSMQFVRSRIFPFKRRKVENPEIICPVASPVKRKERSLSSLTIPA 90
Query: 176 -QQTSAELLLESKPKVDCLRKWPAH 247
Q + + L + + K CLR +P H
Sbjct: 91 PQVSIQKCLTKRRTKASCLRNFPLH 115
>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 143 CKWDGICTDLAYYSHFFQFLEALSLLYV*FF 51
C W G C L Y FF F+ +LL V F
Sbjct: 938 CPWVGQCIGLRNYRFFFLFISTSTLLCVYVF 968
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,743,193
Number of Sequences: 37544
Number of extensions: 420260
Number of successful extensions: 1138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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