Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b07
         (463 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZBT5 Cluster: Mediator of RNA polymerase II transcrip...   103   2e-21
UniRef50_A7T1N3 Cluster: Predicted protein; n=2; Nematostella ve...    58   9e-08
UniRef50_Q96G25 Cluster: Mediator of RNA polymerase II transcrip...    51   1e-05
UniRef50_Q4SRU6 Cluster: Chromosome undetermined SCAF14488, whol...    43   0.003
UniRef50_A3DI66 Cluster: Transketolase-like protein; n=1; Clostr...    32   7.0  
UniRef50_Q6BS39 Cluster: Similar to CA5016|IPF7561 Candida albic...    32   7.0  
UniRef50_A7ATM7 Cluster: Putative uncharacterized protein; n=1; ...    31   9.2  

>UniRef50_A1ZBT5 Cluster: Mediator of RNA polymerase II
           transcription subunit 8; n=8; Endopterygota|Rep:
           Mediator of RNA polymerase II transcription subunit 8 -
           Drosophila melanogaster (Fruit fly)
          Length = 252

 Score =  103 bits (246), Expect = 2e-21
 Identities = 54/115 (46%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
 Frame = +1

Query: 97  KHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR--- 267
           K + Q+ KVVSHV +++SK RE+WE ES   TG+Q T ++ADT  LV AVG GKGL+   
Sbjct: 138 KQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADTQLLVAAVGMGKGLKLTN 197

Query: 268 --PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLPKAPSAIKTNIKAANQIHPYQR 426
             PG   MV                 G     L KAPSA+KTNIK+ANQ+HP+ R
Sbjct: 198 YGPGPGMMVPPSIRAPSPMGGPAMSPGNVQQQLGKAPSAVKTNIKSANQVHPFSR 252


>UniRef50_A7T1N3 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 264

 Score = 58.0 bits (134), Expect = 9e-08
 Identities = 35/109 (32%), Positives = 49/109 (44%)
 Frame = +1

Query: 94  QKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLRPG 273
           QK I    ++++ + +II+  +EDWEGE   S     +    D  ALV AV  GKGL+P 
Sbjct: 149 QKQINHLNELLTTLTDIITSAKEDWEGE-QNSASRSTSSTNPDIGALVAAVTFGKGLKPN 207

Query: 274 MANMVGQXXXXXXXXXXXXXQLGPAPSTLPKAPSAIKTNIKAANQIHPY 420
                 +              +        K PS+IKT +KAA   HPY
Sbjct: 208 KTTNSSKTRTSTSSEQGSAQWMNNKADQPGKHPSSIKTELKAAASPHPY 256


>UniRef50_Q96G25 Cluster: Mediator of RNA polymerase II
           transcription subunit 8; n=45; Euteleostomi|Rep:
           Mediator of RNA polymerase II transcription subunit 8 -
           Homo sapiens (Human)
          Length = 268

 Score = 50.8 bits (116), Expect = 1e-05
 Identities = 47/135 (34%), Positives = 58/135 (42%), Gaps = 24/135 (17%)
 Frame = +1

Query: 94  QKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR-- 267
           QK I    K+ S++ E ISK   + E   +R    + T N  DT+ALV AV  GKGL   
Sbjct: 137 QKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVAFGKGLSNW 194

Query: 268 -------PGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP---------------KAPSAI 381
                  PG A   G              Q+  APS                  K PS I
Sbjct: 195 RPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGI 254

Query: 382 KTNIKAANQIHPYQR 426
           KTNIK+A+ +HPYQR
Sbjct: 255 KTNIKSAS-MHPYQR 268


>UniRef50_Q4SRU6 Cluster: Chromosome undetermined SCAF14488, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14488, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 324

 Score = 43.2 bits (97), Expect = 0.003
 Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
 Frame = +1

Query: 94  QKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGL--- 264
           QK I    KV S + E ++  RE+ + ES+     +   N ADT+ LV AV  G+GL   
Sbjct: 195 QKQIQALNKVCSGLLEKLNNPREERDAESISLRQNKQYFNPADTNTLVGAVAFGRGLSKC 254

Query: 265 ---------RPGMANMVGQXXXXXXXXXXXXXQLGPAPSTLP-------KAPSAIKTNIK 396
                     PG   M+G               +  A S +P       K  S+IKTNIK
Sbjct: 255 RPAGPVAPGHPGPGTMMG-GGTALQQAAIGGGAVQQAGSVVPQQQGQQGKMASSIKTNIK 313

Query: 397 -AANQIHPYQR 426
            A++ +HPY R
Sbjct: 314 SASSSMHPYNR 324


>UniRef50_A3DI66 Cluster: Transketolase-like protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep:
           Transketolase-like protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 278

 Score = 31.9 bits (69), Expect = 7.0
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +1

Query: 100 HIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLRPGMA 279
           H A+   V+ H +  I K   D  G      G  PT  I    A   ++G G GL  GMA
Sbjct: 72  HAAEAYYVLLHEYGYIDKSDLDAFGSFQAKLGGHPTKKIKGVEANTGSLGHGLGLATGMA 131


>UniRef50_Q6BS39 Cluster: Similar to CA5016|IPF7561 Candida albicans
           IPF7561 unknown function; n=1; Debaryomyces
           hansenii|Rep: Similar to CA5016|IPF7561 Candida albicans
           IPF7561 unknown function - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 1002

 Score = 31.9 bits (69), Expect = 7.0
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -2

Query: 165 VFAAFGYNFPNVTDNFSELSNVFLIIMLILQTNLDYIKELIIHSLI 28
           VFA   +N PN+++    L NV      +L++NL Y K+LII  ++
Sbjct: 223 VFAYSFFNIPNISNALLFLLNVK---QYVLESNLSYFKDLIIDEIL 265


>UniRef50_A7ATM7 Cluster: Putative uncharacterized protein; n=1;
           Babesia bovis|Rep: Putative uncharacterized protein -
           Babesia bovis
          Length = 988

 Score = 31.5 bits (68), Expect = 9.2
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 198 HTCRSH*LSFPVFAAFGYNFPNVTDNF-SELSNVFLIIMLILQTNLDYIKELIIH 37
           H  RS  +S  V +  GYN P V D   SEL +VF  ++L  Q    Y++ L IH
Sbjct: 421 HGLRSKSVSGVVKSEVGYNVPTVADRIVSELLDVFEDVVLPTQ-RCKYVQFLYIH 474


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,979,335
Number of Sequences: 1657284
Number of extensions: 6874028
Number of successful extensions: 18265
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18261
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)