Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6b03
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83109-10|CAB05520.2| 435|Caenorhabditis elegans Hypothetical p... 34 0.090
DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein. 31 0.84
AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical ... 31 0.84
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 29 4.5
AB017106-1|BAA88837.1| 607|Caenorhabditis elegans Kinesin like ... 29 4.5
Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical pr... 28 7.8
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 28 7.8
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 28 7.8
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 28 7.8
>Z83109-10|CAB05520.2| 435|Caenorhabditis elegans Hypothetical
protein F44G3.8 protein.
Length = 435
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/89 (22%), Positives = 42/89 (47%)
Frame = +3
Query: 462 DTIVIESIYDNMNNLVEIVINKVSNVPRILMQLIGLMVPYFRKLNRINIRNCKTNVYTIH 641
D + + I++ +I +++ N ++L ++ F+ + INI C T
Sbjct: 66 DLVRVIKIFEKKLKTFQIYFSRLDN--QVLNAYFEALLNNFKIIGPINIETCYFGSLTPS 123
Query: 642 ELRKMIPFSTITDVCLNGSTLSEINYATL 728
EL +++PF +T++ L S S + A +
Sbjct: 124 ELSRVLPFLEVTNIHLQTSNPSYFSIANI 152
>DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein.
Length = 690
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 659 YHFSQFMNCVNVCFAISDIDSIEFSKIR 576
YHFS NC N+ +I D S +F IR
Sbjct: 217 YHFSDIYNCTNLISSIEDFASSQFRCIR 244
>AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical
protein W02G9.2 protein.
Length = 690
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 659 YHFSQFMNCVNVCFAISDIDSIEFSKIR 576
YHFS NC N+ +I D S +F IR
Sbjct: 217 YHFSDIYNCTNLISSIEDFASSQFRCIR 244
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/90 (24%), Positives = 38/90 (42%)
Frame = +3
Query: 309 FQNDYFYKSSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIY 488
FQ+ Y SSKG+ R + LP N + A I + ++ S+
Sbjct: 701 FQSALLYTSSKGDRRIRVHTMCLPTTGDLLQLYNNFDLKATVSYLAKIGVERSMTGSSLA 760
Query: 489 DNMNNLVEIVINKVSNVPRILMQLIGLMVP 578
D+ LV V++ V + + + G++VP
Sbjct: 761 DSREALVNAVVDSVGAYQKAVSRGSGMLVP 790
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
protein F20C5.2b protein.
Length = 1130
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +3
Query: 147 KTQSMRSVRSAKSLKSIKSAHDDSVDPK---VMEFKDYIEMATKQ 272
KT+++ ++R A K+IK+ + DPK + EF++ IEM +Q
Sbjct: 313 KTETLGTLRYANRAKNIKNQPKINEDPKDALLREFQEEIEMLREQ 357
>AB017106-1|BAA88837.1| 607|Caenorhabditis elegans Kinesin like
protein (klp-11) protein.
Length = 607
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +3
Query: 147 KTQSMRSVRSAKSLKSIKSAHDDSVDPK---VMEFKDYIEMATKQ 272
KT+++ ++R A K+IK+ + DPK + EF++ IEM +Q
Sbjct: 276 KTETLGTLRYANRAKNIKNQPKINEDPKDALLREFQEEIEMLREQ 320
>Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical
protein F18E2.4 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -1
Query: 450 WMLAMLHLCNNSMHSCPNFVHLLL 379
W++A+ LC + +H CP ++L +
Sbjct: 272 WVIAIAELCWSIVHGCPAIIYLTM 295
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 694 PF-RQTSVIVENGIIFLNS*IV*TFVLQFLILILLSFRKY 578
PF R+T IVE G++ L + +V V+ + ++L+ F KY
Sbjct: 86 PFVRETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKY 125
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 694 PF-RQTSVIVENGIIFLNS*IV*TFVLQFLILILLSFRKY 578
PF R+T IVE G++ L + +V V+ + ++L+ F KY
Sbjct: 86 PFVRETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKY 125
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 694 PF-RQTSVIVENGIIFLNS*IV*TFVLQFLILILLSFRKY 578
PF R+T IVE G++ L + +V V+ + ++L+ F KY
Sbjct: 86 PFVRETDSIVEKGLMSLGNALVMLCVVVLMTVLLIVFYKY 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,104,109
Number of Sequences: 27780
Number of extensions: 297775
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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