Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b01
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.1  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   2.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.9  

>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 144 TAVGKMEGNTVHPHPSVVPGLPPGVIHGMTV-HGSGPNGEHIPHGP--RRRYQTRPKPNN 314
           TA+  + G+  H   S+ P   P   + M V HG G  G ++P  P  + +  TR     
Sbjct: 72  TALPHLSGDMTHG-ASISPQNTPPAGYPMDVPHGMGSPGVNVPEYPWMKEKKTTRKSSQQ 130

Query: 315 LQRLP 329
              LP
Sbjct: 131 ENGLP 135


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 144 TAVGKMEGNTVHPHPSVVPGLPPGVIHGMTV-HGSGPNGEHIPHGP 278
           TA+  + G+  H   S+ P   P   + M V HG G  G ++P  P
Sbjct: 72  TALPHLSGDMTHG-ASISPQNTPPAGYPMDVPHGMGSPGVNVPEYP 116


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 327 PLDEAAKREMESLPTKTPVSVLQE 398
           P+DE   ++M+    KT VSV +E
Sbjct: 513 PIDEYVVQQMKEFDGKTLVSVTKE 536


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 238 TAVDRTVNTFLTVQDAAIR 294
           +AVD T N  L   DAAIR
Sbjct: 226 SAVDTTTNQKLLTVDAAIR 244


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 73  VLFYFSYCIRFIFNSKFR*IHL*LRLWEKWKGIRSTRIHLWYRVYHP 213
           VLF+FS+C    F      I+L    W++   + ++++   YR  +P
Sbjct: 9   VLFFFSFCCILFF------IYL---YWQQTSNLTTSKLLYTYRQPYP 46


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 137 CNYGCGKNGREYGPPASICGTGFTTRCYPW 226
           C   CGK G  +  P S+     T   +P+
Sbjct: 61  CRLVCGKYGALWPQPTSVTKISSTLLKFPY 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,495
Number of Sequences: 336
Number of extensions: 5066
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)