Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6b01
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    28   1.6  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    27   2.1  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   3.7  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   4.9  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   6.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.6  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 73  VLFYFSYCIRFI-FNSKFR*IHL*LRLWEKWKGIRSTRIHLWYRVYHPVLS 222
           +L  +SY   FI F S +  I L      KW    S+ I  WY +Y P ++
Sbjct: 326 ILKLYSYMSLFILFGSNYSDIVLLFGAGSKWASPDSSSILSWYAMYIPFMA 376


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 279 RRRYQTRPKPNNLQRLPLDEAAKREMESL---PTKTPVSVLQELLARRG 416
           R+RY+T+    N  +  +D+      ++L      TP+SVLQ LL + G
Sbjct: 287 RKRYETKKATFNRLKNTIDDFESGNYDALFILSIHTPMSVLQHLLPKLG 335


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 243 SGPNGEHIPHGPRRRYQTRPKPNNLQRLP--LDEAAKREMESLPTKTPVS 386
           S PNG+        +   RP  N++Q+ P  +D  A     SL ++ P+S
Sbjct: 44  STPNGKEAASPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLS 93


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 237 HGSGPNGEHIPHGPRRRYQTRPKPN 311
           HGSG +    P+G R  Y+T P  N
Sbjct: 310 HGSGSSNGVAPNGKRALYKTEPCKN 334


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -2

Query: 691 HNS*SHPTGLPISLSSNVGTTAPVSGTLPLVV*SAGVAP--VNLSSKALAAECFASFFER 518
           H S    T   +  + +  T+AP   T P  + +   AP   N+SS +L    FA    +
Sbjct: 342 HKSQDSATPANVETTPSTATSAPKKSTAPFAINAVKPAPGLSNISSASLPKPSFA----K 397

Query: 517 PVPIATKSATVTL 479
              + ++S+T ++
Sbjct: 398 QAAVGSQSSTTSM 410


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -2

Query: 676  HPTGLPISLSSNVGTTAPVSGTLPLVV*SAGVAPVNLSSKALAAECFASFFERPVPIATK 497
            HP   P+S   +    AP++   P+   S+   PV L S A A          PVPI T 
Sbjct: 990  HPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPS-ADAPPIPVPSTAPPVPIPTS 1048

Query: 496  SATV 485
            +  V
Sbjct: 1049 TPPV 1052


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 309 NNLQRLPLDEAAKREMESL--PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYR 482
           N L R+ + E++  +  SL   +K+ +  L+       T  K E+ Q+E  +HE +    
Sbjct: 225 NYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATKHKNEIFQLEEKLHEASHEAE 284

Query: 483 VTVADL 500
           +++  L
Sbjct: 285 ISIKKL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,418
Number of Sequences: 5004
Number of extensions: 77245
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)