Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6b01
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 32 0.42
12_01_1005 - 10182297-10182482,10183904-10184044 31 0.73
09_02_0282 - 6795269-6795564,6795682-6795761,6795873-6795926,679... 30 1.7
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 29 2.9
06_02_0225 + 13257655-13260693 29 2.9
01_05_0513 - 22864657-22867899 29 2.9
08_02_0951 + 22976130-22977320 29 3.9
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 3.9
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 29 5.1
01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770... 29 5.1
07_03_1159 - 24427896-24428288 28 6.8
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 28 6.8
02_05_0442 - 29044736-29046604 28 6.8
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 28 6.8
04_01_0034 - 401208-402923 28 9.0
02_03_0116 - 15440263-15441024,15441097-15443451 28 9.0
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 174 VHPHPSVVP---GLPPGVIHGMTVHGSGPNGEHIPHGPRRRYQTRPKPNNLQRLPLDE 338
V+P PS VP GL P G+ PNG + G RYQ KP + P+ E
Sbjct: 453 VNPSPSAVPSKPGLGPSSYTPEAAKGALPNGTQLRRGGMDRYQRVEKPR--EEAPIKE 508
>12_01_1005 - 10182297-10182482,10183904-10184044
Length = 108
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 149 CGKNGREYGPPASICGTGFTTRCYPWN 229
CGK+GR + CG GFT C W+
Sbjct: 17 CGKDGRNHWREDVGCGLGFTFACVDWS 43
>09_02_0282 -
6795269-6795564,6795682-6795761,6795873-6795926,
6796003-6796081,6796893-6796952,6798152-6798161
Length = 192
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 320 LQVIRFGSGLIAASWTVRNVFTVRSTAVHCHSMDNTGW*TRYHRWMRVDRIPFH 159
L+V G G ++ +N+ VR+ H + DN GW T H W V+ +H
Sbjct: 27 LKVSLSGIGCTIPTFAGKNI--VRARLYHSSTRDNVGWETN-HSWFMVNDRAYH 77
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -2
Query: 475 RKVGSCIMPSIWTSSYLGTVPRRANSSCKTETGVFVGSDSISLLAASSKGNL 320
R V +C++ S+ T +GTV R NSSC G+ + S+ L+A S L
Sbjct: 243 RNVPNCLLVSLPTQ--VGTVKRAHNSSCSPMEGIPILHISVVDLSALSYNKL 292
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 147 AVGKMEGNTVHPHPSVVPGLPPGVI 221
AV + +G + HPSV+ G PPG +
Sbjct: 650 AVAEYQGRPLQDHPSVLNGRPPGAL 674
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 141 TTAVGKMEGNTVHPHPSVVPGLPPGVIHGMTVHGSGPNGEHIP---HGP 278
T A +++ VHP +V PP + H M GP+G +P HGP
Sbjct: 200 TEAAVEVQQPPVHPPVIIVEEAPPPMHHPMMPPMHGPHGPMMPPAVHGP 248
>08_02_0951 + 22976130-22977320
Length = 396
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 264 IPHGPRRRYQTRPKPNNLQRLPLDEAAKREMESLPTKT 377
+ HG R P+ L R+P D A R+ S PTKT
Sbjct: 105 LAHGLLLRSDLAPRAARLGRVPFDLADFRDRSSSPTKT 142
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 221 PWNDSARQWTER*TH 265
PW+DS+++WTER H
Sbjct: 1893 PWSDSSQEWTERMKH 1907
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 297 RPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQE 398
R KP+ ++PL + KR + P + PVSV++E
Sbjct: 247 RSKPSLTAKMPLPKVPKRRGYTEPYQPPVSVVEE 280
>01_07_0099 -
41076056-41076059,41076135-41076175,41076937-41077041,
41077476-41077552,41078773-41078944,41079099-41079194,
41080268-41080465
Length = 230
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -1
Query: 494 SHSYSVPESGFMYHAFYLD*FIFRNSSTTCQQLLQN 387
++ +++ ++ F ++FYLD +F SS+T LLQ+
Sbjct: 186 AYQHTIADATFKNYSFYLDVNLFSRSSSTAGFLLQS 221
>07_03_1159 - 24427896-24428288
Length = 130
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 180 PHPSVVPGLP-PGVIHGMTVHGSGPNGEHIPHGPRRRYQTRPKPNNLQRLPLDEAAKREM 356
PH +V P LP P + HG V P +P P PKP + + E K E+
Sbjct: 51 PHLAV-PELPKPELPHGAAV----PEFPKVPELPHPEVPELPKPELPEHPAVPELPKPEL 105
Query: 357 ESLP 368
SLP
Sbjct: 106 PSLP 109
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 216 VIHGMTVHGSGPNGEHIPHGPRRRYQTRPKPN--NLQRLPLDEAAKREMESLPT 371
V H ++ SG + E PRRR +T P P+ +L+R E +R S PT
Sbjct: 6 VAHNLSPSASGDDSEQ---NPRRRARTPPPPSRRSLRREEALEGVERSATSPPT 56
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 192 VVPGLPPGVIHGMTVHGSGPNGEHIPHGPRRRY 290
VV G P + G +GPN +H+P GP +
Sbjct: 151 VVRGAIPRCLAGGAYIRNGPNPQHLPRGPHHLF 183
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 678 LQELCMSRFWPPPSY 722
LQELC R W PP Y
Sbjct: 6 LQELCQQRRWAPPEY 20
>04_01_0034 - 401208-402923
Length = 571
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +3
Query: 147 AVGKMEGNTVHPHPSV-VPGLPPGVIHGMTVHGS-GPNGEHIPHGPRRRYQTRPKP 308
A+GK + VH H PP P E PH PR Q RP P
Sbjct: 252 AIGKENASPVHHHHHCGKENAPPAAKQAAAAPPMRAPLAEQQPHAPRLPLQPRPAP 307
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 222 HGMTVHGSGPNGEHIPHGPRRRYQTRPKPN--NLQRLPLDEAAKREMESLPT 371
H ++ SG + E PRRR +T P P+ +L+R E +R + S PT
Sbjct: 8 HNLSPSASGDDSEQ---NPRRRARTPPPPSRRSLRREEALEGVERSVTSPPT 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,181,429
Number of Sequences: 37544
Number of extensions: 564758
Number of successful extensions: 1604
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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