Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6b01
(740 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533525-1|CAG38556.1| 313|Homo sapiens PRKRA protein. 60 6e-09
BT007243-1|AAP35907.1| 313|Homo sapiens protein kinase, interfe... 60 6e-09
BC009470-1|AAH09470.1| 313|Homo sapiens protein kinase, interfe... 60 6e-09
AK223107-1|BAD96827.1| 313|Homo sapiens protein kinase, interfe... 60 6e-09
AF083033-1|AAD33099.1| 313|Homo sapiens PKR-associating protein... 60 6e-09
AF072860-1|AAC25672.1| 313|Homo sapiens protein activator of th... 60 6e-09
AC009948-2|AAX88882.1| 313|Homo sapiens unknown protein. 60 6e-09
U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2... 57 8e-08
M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein p... 57 8e-08
BT007140-1|AAP35804.1| 366|Homo sapiens TAR (HIV) RNA binding p... 57 8e-08
BC005860-1|AAH05860.1| 366|Homo sapiens Tar (HIV-1) RNA binding... 57 8e-08
AF281068-2|AAL55730.1| 53|Homo sapiens TAR RNA-binding protein... 54 5e-07
AF281068-1|AAL55731.1| 74|Homo sapiens TAR RNA-binding protein... 54 5e-07
X98559-2|CAA67169.1| 931|Homo sapiens dsRNA adenosine deaminase... 35 0.27
X98559-1|CAA67170.1| 1221|Homo sapiens dsRNA adenosine deaminase... 35 0.27
X79449-1|CAA55968.1| 1226|Homo sapiens IFI-4 protein. 35 0.27
X79448-1|CAA55967.1| 931|Homo sapiens IFI-4 protein. 35 0.27
U75503-3|AAB97117.1| 1181|Homo sapiens RNA adenosine deaminase p... 35 0.27
U75503-2|AAB97116.1| 1200|Homo sapiens RNA adenosine deaminase p... 35 0.27
U75503-1|AAB97118.1| 1226|Homo sapiens RNA adenosine deaminase p... 35 0.27
U18121-1|AAC13782.1| 1226|Homo sapiens p136 protein. 35 0.27
U10439-1|AAB06697.1| 1226|Homo sapiens double-stranded RNA adeno... 35 0.27
BX640741-1|CAE45853.1| 1278|Homo sapiens hypothetical protein pr... 35 0.27
BX538232-1|CAD98075.1| 1257|Homo sapiens hypothetical protein pr... 35 0.27
BC038227-1|AAH38227.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.27
AL691488-2|CAI17376.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.27
AL691488-1|CAI17375.1| 931|Homo sapiens adenosine deaminase, RN... 35 0.27
AL606500-2|CAH71908.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.27
AL606500-1|CAH71907.1| 931|Homo sapiens adenosine deaminase, RN... 35 0.27
AL592078-4|CAI16185.1| 1226|Homo sapiens adenosine deaminase, RN... 35 0.27
AL592078-2|CAI16183.1| 931|Homo sapiens adenosine deaminase, RN... 35 0.27
AB209891-1|BAD93128.1| 1244|Homo sapiens adenosine deaminase, RN... 35 0.27
X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3... 32 1.9
BX641155-1|CAE46068.1| 558|Homo sapiens hypothetical protein pr... 32 1.9
AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collage... 32 1.9
BC071603-1|AAH71603.1| 691|Homo sapiens zinc finger protein 770... 31 3.3
BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, ty... 31 3.3
AC112715-1|AAY14906.1| 588|Homo sapiens unknown protein. 31 3.3
>CR533525-1|CAG38556.1| 313|Homo sapiens PRKRA protein.
Length = 313
Score = 60.5 bits (140), Expect = 6e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 545
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 546 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSY 722
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINIL----KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 145
>BT007243-1|AAP35907.1| 313|Homo sapiens protein kinase,
interferon-inducible double stranded RNA dependent
activator protein.
Length = 313
Score = 60.5 bits (140), Expect = 6e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 545
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 546 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSY 722
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINIL----KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 145
>BC009470-1|AAH09470.1| 313|Homo sapiens protein kinase,
interferon-inducible double stranded RNA dependent
activator protein.
Length = 313
Score = 60.5 bits (140), Expect = 6e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 545
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 546 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSY 722
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINIL----KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 145
>AK223107-1|BAD96827.1| 313|Homo sapiens protein kinase,
interferon-inducible double stranded RNA dependent
activator va protein.
Length = 313
Score = 60.5 bits (140), Expect = 6e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 545
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 546 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSY 722
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINIL----KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 145
>AF083033-1|AAD33099.1| 313|Homo sapiens PKR-associating protein
RAX protein.
Length = 313
Score = 60.5 bits (140), Expect = 6e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 545
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 546 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSY 722
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINIL----KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 145
>AF072860-1|AAC25672.1| 313|Homo sapiens protein activator of the
interferon-induced protein kinase protein.
Length = 313
Score = 60.5 bits (140), Expect = 6e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 545
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 546 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSY 722
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINIL----KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 145
>AC009948-2|AAX88882.1| 313|Homo sapiens unknown protein.
Length = 313
Score = 60.5 bits (140), Expect = 6e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRXXXXXXXX 545
P KTP+ VL E + +P YE + + IH PTF +RVTV D+ G G
Sbjct: 31 PGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTSKKLAKHR 90
Query: 546 XXXXLLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSY 722
++ L A+ + VP+ P+ + K NP+G LQEL + W P Y
Sbjct: 91 AAEAAINIL----KANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLPEY 145
>U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2
protein.
Length = 366
Score = 56.8 bits (131), Expect = 8e-08
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG 77
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 378 PVSVLQELLARRG-TVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
PV LQEL+ ++G +P+Y + Q G H F V + +G+G
Sbjct: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG 207
>M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein
protein.
Length = 345
Score = 56.8 bits (131), Expect = 8e-08
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 6 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG 56
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 378 PVSVLQELLARRG-TVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
PV LQEL+ ++G +P+Y + Q G H F V + +G+G
Sbjct: 139 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG 186
>BT007140-1|AAP35804.1| 366|Homo sapiens TAR (HIV) RNA binding
protein 2 protein.
Length = 366
Score = 56.8 bits (131), Expect = 8e-08
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG 77
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 378 PVSVLQELLARRG-TVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
PV LQEL+ ++G +P+Y + Q G H F V + +G+G
Sbjct: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG 207
>BC005860-1|AAH05860.1| 366|Homo sapiens Tar (HIV-1) RNA binding
protein 2 protein.
Length = 366
Score = 56.8 bits (131), Expect = 8e-08
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D G G
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG 77
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 378 PVSVLQELLARRG-TVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTG 518
PV LQEL+ ++G +P+Y + Q G H F V + +G+G
Sbjct: 160 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG 207
>AF281068-2|AAL55730.1| 53|Homo sapiens TAR RNA-binding protein
TRBP1 protein.
Length = 53
Score = 54.0 bits (124), Expect = 5e-07
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVAD 497
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D
Sbjct: 6 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 49
>AF281068-1|AAL55731.1| 74|Homo sapiens TAR RNA-binding protein
TRBP2 protein.
Length = 74
Score = 54.0 bits (124), Expect = 5e-07
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +3
Query: 366 PTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVAD 497
P KTP+S+LQE R G P Y+L++ EG H+P F +RVTV D
Sbjct: 27 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 70
>X98559-2|CAA67169.1| 931|Homo sapiens dsRNA adenosine deaminase
protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>X98559-1|CAA67170.1| 1221|Homo sapiens dsRNA adenosine deaminase
protein.
Length = 1221
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 608 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 647
>X79449-1|CAA55968.1| 1226|Homo sapiens IFI-4 protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>X79448-1|CAA55967.1| 931|Homo sapiens IFI-4 protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>U75503-3|AAB97117.1| 1181|Homo sapiens RNA adenosine deaminase
protein.
Length = 1181
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>U75503-2|AAB97116.1| 1200|Homo sapiens RNA adenosine deaminase
protein.
Length = 1200
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>U75503-1|AAB97118.1| 1226|Homo sapiens RNA adenosine deaminase
protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>U18121-1|AAC13782.1| 1226|Homo sapiens p136 protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>U10439-1|AAB06697.1| 1226|Homo sapiens double-stranded RNA
adenosine deaminase protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>BX640741-1|CAE45853.1| 1278|Homo sapiens hypothetical protein
protein.
Length = 1278
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 644 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 683
>BX538232-1|CAD98075.1| 1257|Homo sapiens hypothetical protein
protein.
Length = 1257
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 644 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 683
>BC038227-1|AAH38227.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL691488-2|CAI17376.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL691488-1|CAI17375.1| 931|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>AL606500-2|CAH71908.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL606500-1|CAH71907.1| 931|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>AL592078-4|CAI16185.1| 1226|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 1226
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 613 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 652
>AL592078-2|CAI16183.1| 931|Homo sapiens adenosine deaminase,
RNA-specific protein.
Length = 931
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 318 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 357
>AB209891-1|BAD93128.1| 1244|Homo sapiens adenosine deaminase,
RNA-specific isoform ADAR-a variant protein.
Length = 1244
Score = 35.1 bits (77), Expect = 0.27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 372 KTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTV 491
K+PV+ L E + + G ++ L+ EG HEP F+Y V V
Sbjct: 631 KSPVTTLLECMHKLGNSCEFRLLSKEGPAHEPKFQYCVAV 670
>X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3
chain protein.
Length = 3176
Score = 32.3 bits (70), Expect = 1.9
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 691 HNS*SHPTGLPISLSSNVGTTAPVSGTL-PLVV*SAGVAPVNLSS-KALAAECFASFFER 518
+N S PT P++ + V TT PV+ T P+ + V +N S K AA+ +
Sbjct: 2860 NNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVA 2919
Query: 517 PVPIATKSATV 485
P+ATK+ATV
Sbjct: 2920 AKPVATKTATV 2930
>BX641155-1|CAE46068.1| 558|Homo sapiens hypothetical protein
protein.
Length = 558
Score = 32.3 bits (70), Expect = 1.9
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 691 HNS*SHPTGLPISLSSNVGTTAPVSGTL-PLVV*SAGVAPVNLSS-KALAAECFASFFER 518
+N S PT P++ + V TT PV+ T P+ + V +N S K AA+ +
Sbjct: 241 NNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVA 300
Query: 517 PVPIATKSATV 485
P+ATK+ATV
Sbjct: 301 AKPVATKTATV 311
>AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collagen
isoform 5 precursor variant protein.
Length = 1702
Score = 32.3 bits (70), Expect = 1.9
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 691 HNS*SHPTGLPISLSSNVGTTAPVSGTL-PLVV*SAGVAPVNLSS-KALAAECFASFFER 518
+N S PT P++ + V TT PV+ T P+ + V +N S K AA+ +
Sbjct: 1385 NNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVA 1444
Query: 517 PVPIATKSATV 485
P+ATK+ATV
Sbjct: 1445 AKPVATKTATV 1455
>BC071603-1|AAH71603.1| 691|Homo sapiens zinc finger protein 770
protein.
Length = 691
Score = 31.5 bits (68), Expect = 3.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 182 RVDRIPFHFSHSRSYKCIYRNLLLKMKRIQYEK*KRTELDLQ-FRKTTYVTCTLNLCEMS 6
R +IP F S +YK I + +L K+KR + +K + + + F+K+ C L E S
Sbjct: 318 RSGKIPSRFKRSYNYKTIVKKILAKLKRARSKKLDNFQSEKKVFKKSFLRNCDLISGEQS 377
>BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, type
VI, alpha 3 protein.
Length = 979
Score = 31.5 bits (68), Expect = 3.3
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -2
Query: 691 HNS*SHPTGLPISLSSNVGTTAPVSGTL-PLVV*SAGVAPVNLSS-KALAAECFASFFER 518
+N S PT P++ + V TT PV+ T P+ + V +N S K AA+ +
Sbjct: 662 NNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVA 721
Query: 517 PVPIATKSATV 485
P+ATK ATV
Sbjct: 722 AKPVATKMATV 732
>AC112715-1|AAY14906.1| 588|Homo sapiens unknown protein.
Length = 588
Score = 31.5 bits (68), Expect = 3.3
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -2
Query: 691 HNS*SHPTGLPISLSSNVGTTAPVSGTL-PLVV*SAGVAPVNLSS-KALAAECFASFFER 518
+N S PT P++ + V TT PV+ T P+ + V +N S K AA+ +
Sbjct: 271 NNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVA 330
Query: 517 PVPIATKSATV 485
P+ATK ATV
Sbjct: 331 AKPVATKMATV 341
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,512,937
Number of Sequences: 237096
Number of extensions: 3149813
Number of successful extensions: 11729
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 11030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11722
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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