Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6a23
         (593 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse t...    26   1.1  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    25   1.8  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   4.3  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   7.4  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   9.8  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   9.8  

>AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +1

Query: 400 SSTTVHKEEGNLIARSRASGFKFQPNLNSREEIERFRTSVDDISCDKVTQRLGLTE 567
           S   +H    N+I +S+   F F+P+L++  ++ R   ++    C++ +  L L +
Sbjct: 21  SRMALHTFNNNIIPKSQ---FGFRPSLSTTHQLHRVTNNIVHNRCNRKSTGLALLD 73


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 175 LRGPEVVLLLGCRFQLSPVPGS 110
           LRGPE V     R +  PVPG+
Sbjct: 308 LRGPEAVREAAGRLRTGPVPGA 329


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 118 GREIIEIDNPIKELPPGLEEEPSAENDEDGTSA 216
           G EII   + +  L PG+  E +++  E+  SA
Sbjct: 672 GAEIIAFADDLLLLDPGITPEAASQRAEEAVSA 704


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 13/71 (18%), Positives = 27/71 (38%)
 Frame = +1

Query: 292 ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGFKFQ 471
           +  +  +D+  +  +    + K + D  +DR   D     +     N   RSR+S     
Sbjct: 227 QKAHQRIDEGKRTIKTYEALVKSSLDPNSDRLTEDDEDENISVTRTNSTIRSRSSSLSRS 286

Query: 472 PNLNSREEIER 504
            + + + E  R
Sbjct: 287 RSCSRQAETPR 297


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 246 GSPLRSWTQSGA 211
           G P R WT+SGA
Sbjct: 112 GEPSRRWTRSGA 123


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 246 GSPLRSWTQSGA 211
           G P R WT+SGA
Sbjct: 112 GEPSRRWTRSGA 123


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.311    0.128    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,362
Number of Sequences: 2352
Number of extensions: 11643
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)